Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

39592126 .. 39597523

Gene Structure 5398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGAAAGCCTTCAAAGCGGTCGAGAAAGGCGCCTGAAAGTGACAGTGATTTTGAGGACGGTGGTGATTTGGATAGCCATGAGCTAAATATGGAGGAAGAGGAGGATGAATTTGAGGACGAGGAGGATGAAAAATCTGGTAATGAAGAAGAATCCGGTAGCGGAGAAGAAGAGGATGAAGAAGAGGGGGAAGAAGAAAATGGTAATAAAGATGCTGAGATGGAAGAACTTGAGAAACAATACATGGATATTCGTCACGAAGAGCAAGATATTCTCAAGAATCTAAAGCATCACAAGGGTGAAGATCTTCTCAAAGGTCAAGCACTGAAGAACCAAAAGGCTATCTGGGACAAAACTCTTGAGTTCAGATTCTTGCTTCAGAAAGCGTTCTCAAGTTCAAATAGATTACCACAGGAGCCAGTTAGGTCTCTGTTCTGTGGATCACATGAGGATGTGAATGCAGCATATTCCGATCTAGTTACATCATCAAAGAAAACTTTGAATTCTCTTCTGGAACTGCAAGAGGCTTTGGTTGAAAAGAGCCCATCTATCACACAAGATGCAACAACTGGTAACTCTGGACGATCTAAGCATTCAGAACCATCTAAGAACATTGGTGTTGATGGTGATGAGGATTGGTCAAGGATTTCTAACTGGCTTTCAAGAATAGCTACTTTCAGAAACAAAGAAATTGACAAATGGCAAACGAGGGCACAGGTCAACACAGGTGCTGCTTCTATTAAGGGCCGACTACAAGCTTTTAATCAGAGTATTAGCCAACAAGTTGCTGCCTATATGAGAGATCCAAGCAGAATGGTTAAACAGATGCAGATGAGGCGATCGGCAGTTGGTGTATTTGGGACTGTTCTTAAGGGGGAGGATACTCCAAAGGGAGAGGAATCCCAATCTGATGCTGCTGAGCAAGCTGATGGTGACCCTGAACTTTTGGATGACTCGGAGTTTTACCAGCAATTACTAAAAGAATTTTTTGAGACAATTGACCCAACATCTTCTGAGACGGCCTTTTATTCACTGAAAAAGATGCAGTCTAAGAAGAGGAAGATTGTTGATAGGCGAGCCTCAAAGAGTCGTAAGATAAGGTATAATGTTCATGAGAAGATTGTAAATTTCATGGCTCCAGAGCCTAGGGTTCTTCCTCCTATGTTCCCTGACCTCACTTGTTTGTTCGGAATGAAGAACTCAAAACCAGCTTCTGTAGTGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

408

Amino Acids

46.35

Weight (kDa)

4.92

Isoelectric Point (pI)

62.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	102 - 237	9.6e-30	Apoptosis antagonizing transcription factor
TRAUB	PF08164	322 - 383	1.6e-20	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AciI	CCGC	3 cut(s)	19, 162, 1222
AclWI	GGATC	2 cut(s)	448, 797
AcsI	RAATTY	4 cut(s)	110, 502, 983, 1126
AcuI	CTGAAG	2 cut(s)	347, 362
AcyI	GRCGYC	1 cut(s)	32
AflII	CTTAAG	1 cut(s)	869
AgsI	TTSAA	5 cut(s)	15, 399, 502, 536, 663
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	5 cut(s)	85, 671, 758, 926, 1211
AluI	AGCT	5 cut(s)	85, 671, 758, 926, 1211
Alw26I	GTCTC	3 cut(s)	432, 986, 1010
AlwI	GGATC	2 cut(s)	448, 797
AlwNI	CAGNNNCTG	2 cut(s)	731, 1214
AoxI	GGCC	2 cut(s)	745, 1020
ApeKI	GCWGC	4 cut(s)	461, 731, 788, 914
ApoI	RAATTY	4 cut(s)	110, 502, 983, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	3 cut(s)	10, 306, 386
AspA2I	CCTAGG	1 cut(s)	1145
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	745
AsuHPI	GGTGA	4 cut(s)	77, 311, 638, 944
AvrII	CCTAGG	1 cut(s)	1145
BaeGI	GKGCMC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	473, 718, 775, 901
BccI	CCATC	5 cut(s)	214, 553, 610, 617, 923
BceAI	ACGGC	1 cut(s)	1035
BciVI	GTATCC	1 cut(s)	874
BcoDI	GTCTC	3 cut(s)	432, 986, 1010
BfaI	CTAG	2 cut(s)	476, 1146
BfmI	CTRYAG	1 cut(s)	1215
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	869
BfuI	GTATCC	1 cut(s)	874
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	4 cut(s)	462, 732, 789, 915
BlnI	CCTAGG	1 cut(s)	1145
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	4 cut(s)	463, 733, 790, 916
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	3 cut(s)	33, 417, 1137
BmsI	GCATC	6 cut(s)	202, 298, 550, 816, 901, 1032
BpmI	CTGGAG	1 cut(s)	1122
Bpu1102I	GCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	4 cut(s)	251, 260, 376, 380
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	1145
BsaWI	WCCGGW	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	419, 574, 659
BseDI	CCNNGG	1 cut(s)	1145
BseGI	GGATG	5 cut(s)	112, 133, 181, 457, 955
BseMII	CTCAG	3 cut(s)	207, 909, 1005
BseNI	ACTGG	3 cut(s)	419, 574, 659
BseRI	GAGGAG	2 cut(s)	116, 137
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	4 cut(s)	473, 718, 775, 901
Bsh1285I	CGRYCG	2 cut(s)	23, 842
BshFI	GGCC	2 cut(s)	747, 1022
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	2 cut(s)	23, 842
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	2 cut(s)	362, 874
BsmAI	GTCTC	3 cut(s)	432, 986, 1010
BsmBI	CGTCTC	1 cut(s)	1010
BsmFI	GGGAC	2 cut(s)	362, 874
BsmI	GAATGC	2 cut(s)	463, 592
BsnI	GGCC	2 cut(s)	747, 1022
Bso31I	GGTCTC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	545, 715
Bsp143I	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
Bsp1720I	GCTNAGC	1 cut(s)	918
BspACI	CCGC	3 cut(s)	19, 162, 1222
BspANI	GGCC	2 cut(s)	747, 1022
BspCNI	CTCAG	3 cut(s)	208, 910, 1006
BspHI	TCATGA	1 cut(s)	1111
BspLI	GGNNCC	3 cut(s)	33, 417, 1137
BspPI	GGATC	2 cut(s)	448, 797
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	419, 574, 659
BssECI	CCNNGG	1 cut(s)	1145
BssMI	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	1145
Bst4CI	ACNGT	3 cut(s)	47, 62, 865
Bst6I	CTCTTC	6 cut(s)	93, 165, 177, 255, 513, 1049
BstACI	GRCGYC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	869
BstC8I	GCNNGC	2 cut(s)	924, 1077
BstDEI	CTNAG	6 cut(s)	216, 588, 606, 918, 1014, 1050
BstEII	GGTNACC	1 cut(s)	932
BstF5I	GGATG	5 cut(s)	112, 133, 181, 457, 955
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	6 cut(s)	307, 443, 475, 587, 805, 842
BstMAI	GTCTC	3 cut(s)	432, 986, 1010
BstMBI	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
BstMCI	CGRYCG	2 cut(s)	23, 842
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 835, 923
BstPI	GGTNACC	1 cut(s)	932
BstSFI	CTRYAG	1 cut(s)	1215
BstSLI	GKGCMC	1 cut(s)	715
BstV1I	GCAGC	4 cut(s)	473, 718, 775, 901
BstX2I	RGATCY	2 cut(s)	304, 802
BstYI	RGATCY	2 cut(s)	304, 802
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	2 cut(s)	747, 1022
BtsCI	GGATG	5 cut(s)	112, 133, 181, 457, 955
BtsIMutI	CAGTG	3 cut(s)	52, 323, 1031
Cac8I	GCNNGC	2 cut(s)	924, 1077
CaiI	CAGNNNCTG	2 cut(s)	731, 1214
CciI	TCATGA	1 cut(s)	1111
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	745
CviAII	CATG	5 cut(s)	80, 244, 446, 1112, 1132
DdeI	CTNAG	6 cut(s)	216, 588, 606, 918, 1014, 1050
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	6 cut(s)	306, 442, 474, 586, 804, 841
DpnII	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
Eam1104I	CTCTTC	6 cut(s)	93, 165, 177, 255, 513, 1049
EarI	CTCTTC	6 cut(s)	93, 165, 177, 255, 513, 1049
Eco130I	CCWWGG	1 cut(s)	1145
Eco24I	GRGCYC	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	432
Eco57I	CTGAAG	2 cut(s)	347, 362
Eco91I	GGTNACC	1 cut(s)	932
EcoO65I	GGTNACC	1 cut(s)	932
EcoRI	GAATTC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	1145
EcoT38I	GRGCYC	1 cut(s)	545
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	1145
Esp3I	CGTCTC	1 cut(s)	1010
FaeI	CATG	5 cut(s)	83, 247, 449, 1115, 1135
FaqI	GGGAC	2 cut(s)	362, 874
FatI	CATG	5 cut(s)	79, 243, 445, 1111, 1131
Fnu4HI	GCNGC	4 cut(s)	462, 732, 789, 915
FokI	GGATG	5 cut(s)	119, 140, 188, 464, 962
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	4 cut(s)	462, 732, 789, 915
FspBI	CTAG	2 cut(s)	476, 1146
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	462, 732, 789, 915
GsuI	CTGGAG	1 cut(s)	1122
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	747, 1022
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	5 cut(s)	83, 247, 449, 1115, 1135
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	6 cut(s)	152, 280, 369, 899, 953, 1087
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	4 cut(s)	77, 311, 638, 944
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188III	TCNNGA	9 cut(s)	24, 257, 277, 359, 512, 579, 663, 1112, 1139
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	3 cut(s)	47, 62, 865
HpyCH4V	TGCA	5 cut(s)	461, 520, 563, 829, 1045
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 835, 923
HpyF3I	CTNAG	6 cut(s)	216, 588, 606, 918, 1014, 1050
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	5 cut(s)	83, 247, 449, 1115, 1135
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	415, 1141
Lsp1109I	GCAGC	4 cut(s)	473, 718, 775, 901
LweI	GCATC	6 cut(s)	202, 298, 550, 816, 901, 1032
MaeI	CTAG	2 cut(s)	476, 1146
MaeIII	GTNAC	5 cut(s)	41, 254, 478, 572, 932
MalI	GATC	6 cut(s)	306, 442, 474, 586, 804, 841
MboI	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	2 cut(s)	304, 802
MhlI	GDGCHC	2 cut(s)	545, 715
MluCI	AATT	7 cut(s)	110, 502, 690, 971, 983, 996, 1126
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	947, 1096
MroXI	GAANNNNTTC	3 cut(s)	10, 306, 386
MseI	TTAA	4 cut(s)	741, 762, 819, 870
MslI	CAYNNNNRTG	2 cut(s)	297, 450
MspCI	CTTAAG	1 cut(s)	869
MspI	CCGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	996
Mva1269I	GAATGC	2 cut(s)	463, 592
MwoI	GCNNNNNNNGC	3 cut(s)	16, 835, 923
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
NlaIII	CATG	5 cut(s)	83, 247, 449, 1115, 1135
NlaIV	GGNNCC	3 cut(s)	33, 417, 1137
NmuCI	GTSAC	3 cut(s)	41, 254, 932
OliI	CACNNNNGTG	1 cut(s)	297
PagI	TCATGA	1 cut(s)	1111
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	2 cut(s)	463, 592
PdmI	GAANNNNTTC	3 cut(s)	10, 306, 386
PfeI	GAWTC	4 cut(s)	152, 280, 369, 899
PkrI	GCNGC	4 cut(s)	463, 733, 790, 916
Ple19I	CGATCG	1 cut(s)	842
PleI	GAGTC	2 cut(s)	947, 1095
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	2 cut(s)	947, 1095
PspEI	GGTNACC	1 cut(s)	932
PspN4I	GGNNCC	3 cut(s)	33, 417, 1137
PspPI	GGNCC	1 cut(s)	745
PstNI	CAGNNNCTG	2 cut(s)	731, 1214
PsuI	RGATCY	2 cut(s)	304, 802
PvuI	CGATCG	1 cut(s)	842
RseI	CAYNNNNRTG	2 cut(s)	297, 450
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	741, 762, 819, 870
SatI	GCNGC	4 cut(s)	462, 732, 789, 915
Sau3AI	GATC	6 cut(s)	304, 440, 472, 584, 802, 839
Sau96I	GGNCC	1 cut(s)	745
SchI	GAGTC	2 cut(s)	947, 1096
SduI	GDGCHC	2 cut(s)	545, 715
SfaNI	GCATC	6 cut(s)	202, 298, 550, 816, 901, 1032
SfcI	CTRYAG	1 cut(s)	1215
SfoI	GGCGCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	2 cut(s)	297, 450
SmlI	CTYRAG	5 cut(s)	230, 275, 359, 391, 869
SmoI	CTYRAG	5 cut(s)	230, 275, 359, 391, 869
Sse9I	AATT	7 cut(s)	110, 502, 690, 971, 983, 996, 1126
SsiI	CCGC	3 cut(s)	19, 162, 1222
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	476, 1146
StyI	CCWWGG	1 cut(s)	1145
TaaI	ACNGT	3 cut(s)	47, 62, 865
TaqI	TCGA	1 cut(s)	23
TasI	AATT	7 cut(s)	110, 502, 690, 971, 983, 996, 1126
TfiI	GAWTC	4 cut(s)	152, 280, 369, 899
Tru1I	TTAA	4 cut(s)	741, 762, 819, 870
Tru9I	TTAA	4 cut(s)	741, 762, 819, 870
TscAI	CASTG	3 cut(s)	52, 330, 1038
TseFI	GTSAC	3 cut(s)	41, 254, 932
TseI	GCWGC	4 cut(s)	461, 731, 788, 914
Tsp45I	GTSAC	3 cut(s)	41, 254, 932
TspDTI	ATGAA	7 cut(s)	123, 144, 159, 192, 1100, 1120, 1208
TspRI	CASTG	3 cut(s)	52, 330, 1038
Vha464I	CTTAAG	1 cut(s)	869
XapI	RAATTY	4 cut(s)	110, 502, 983, 1126
XmaJI	CCTAGG	1 cut(s)	1145
XmnI	GAANNNNTTC	3 cut(s)	10, 306, 386
XspI	CTAG	2 cut(s)	476, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.