Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Forward (+)

47900205 .. 47900651

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTGTCGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCTCTGGCAAGCCTCGAGCCATCGCAATTGGACAACTTCCACGCTCCGTTCCCTACCCTAACCCGTAGCATTCTCTGCCAACAACTTGCCTACAAGGACGACACATCGATCTACACACGCTTCATCCAACTCTGTGGCCGCGAGGCCTGCATCAATCCCGAGAGTGTGCTTGCCCAGAGCACTATTCAGCTTTGGCAGATCAGAATCTCCGGCCGGAAAGCCAACTACCTCCATGACTTGGCCAGGAAGTACCATAATGGAATTCTCTCTGATGCTGCTATTGTAAATATGGACGACAAGTCGTCATTCACAATGCTGACCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

148

Amino Acids

16.27

Weight (kDa)

6.81

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	62 - 125	1.8e-06	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccII	CGCG	1 cut(s)	261
AciI	CCGC	1 cut(s)	259
AcoI	YGGCCR	3 cut(s)	256, 331, 360
AcsI	RAATTY	1 cut(s)	381
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	124, 358
AhdI	GACNNNNNGTC	2 cut(s)	418, 421
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw21I	GWGCWC	1 cut(s)	302
Ama87I	CYCGRG	2 cut(s)	134, 278
AoxI	GGCC	4 cut(s)	256, 264, 331, 360
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	381
AvaI	CYCGRG	2 cut(s)	134, 278
BalI	TGGCCA	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	364
BisI	GCNGC	2 cut(s)	259, 396
BlsI	GCNGC	2 cut(s)	260, 397
Bme1390I	CCNGG	1 cut(s)	364
BmeRI	GACNNNNNGTC	2 cut(s)	418, 421
BmeT110I	CYCGRG	2 cut(s)	134, 278
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	279, 382
Bsa29I	ATCGAT	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 358
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	227
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	2 cut(s)	124, 358
BseX3I	CGGCCG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	4 cut(s)	258, 266, 333, 362
BshVI	ATCGAT	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	134, 278
BsiSI	CCGG	2 cut(s)	330, 334
BslI	CCNNNNNNNGG	2 cut(s)	124, 358
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	4 cut(s)	258, 266, 333, 362
BsoBI	CYCGRG	2 cut(s)	134, 278
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	9, 228, 318
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	4 cut(s)	258, 266, 333, 362
BspDI	ATCGAT	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	261
BssMI	GATC	3 cut(s)	9, 228, 318
Bst2UI	CCWGG	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	130, 268, 291
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	3 cut(s)	12, 231, 321
BstMBI	GATC	3 cut(s)	9, 228, 318
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 267
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstZI	CGGCCG	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	227
BsuRI	GGCC	4 cut(s)	258, 266, 333, 362
BsuTUI	ATCGAT	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	130, 268, 291
ClaI	ATCGAT	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	353, 442
CviJI	RGCY	8 cut(s)	132, 139, 258, 266, 310, 333, 341, 362
CviKI_1	RGCY	8 cut(s)	132, 139, 258, 266, 310, 333, 341, 362
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	3 cut(s)	11, 230, 320
DpnII	GATC	3 cut(s)	9, 228, 318
DriI	GACNNNNNGTC	2 cut(s)	418, 421
EaeI	YGGCCR	3 cut(s)	256, 331, 360
EagI	CGGCCG	1 cut(s)	331
Eam1105I	GACNNNNNGTC	2 cut(s)	418, 421
EclXI	CGGCCG	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	266
Eco52I	CGGCCG	1 cut(s)	331
Eco88I	CYCGRG	2 cut(s)	134, 278
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	362
FaeI	CATG	2 cut(s)	356, 445
FaiI	YATR	4 cut(s)	354, 375, 410, 443
FatI	CATG	2 cut(s)	352, 441
Fnu4HI	GCNGC	2 cut(s)	259, 396
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	259, 396
GluI	GCNGC	2 cut(s)	259, 396
HaeIII	GGCC	4 cut(s)	258, 266, 333, 362
HapII	CCGG	2 cut(s)	330, 334
Hin1II	CATG	2 cut(s)	356, 445
HinfI	GANTC	1 cut(s)	324
HpaII	CCGG	2 cut(s)	330, 334
Hpy188I	TCNGA	2 cut(s)	323, 391
Hpy188III	TCNNGA	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 267
Hsp92II	CATG	2 cut(s)	356, 445
Kzo9I	GATC	3 cut(s)	9, 228, 318
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	7 cut(s)	110, 280, 308, 343, 347, 349, 376
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	279, 382
MalI	GATC	3 cut(s)	11, 230, 320
MboI	GATC	3 cut(s)	9, 228, 318
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	302
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	146, 381
MluNI	TGGCCA	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	4 cut(s)	132, 143, 256, 359
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	362
MspI	CCGG	2 cut(s)	330, 334
MspR9I	CCNGG	1 cut(s)	364
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	195, 267
NdeII	GATC	3 cut(s)	9, 228, 318
NlaIII	CATG	2 cut(s)	356, 445
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	266
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	324
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	260, 397
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	134
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SatI	GCNGC	2 cut(s)	259, 396
Sau3AI	GATC	3 cut(s)	9, 228, 318
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	3 cut(s)	124, 312, 351
SfaNI	GCATC	2 cut(s)	279, 382
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	146, 381
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	362
TaqI	TCGA	3 cut(s)	8, 135, 227
TasI	AATT	2 cut(s)	146, 381
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	381
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.