Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Forward (+)

11476619 .. 11477191

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTTTTAGATCTTAGATATGAATCTCTAAGATTTATTCTCAGTTTTGTTCTCATGGTCATTCTCAGTTTTTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACCGTGAACAGATCTCCTTCTTCTTGTCTACCTTGCTCTGCCATGGAAGAGTTCCACCTCCTCTGCAACCACCTCTTCAGATCTCAGCTTTCTTTGCTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTAATCGGTCAATTGGAGAATGTACGGAGGCTCTGTCCTCCTCATCTCTGCCGACCACCCTTGGTTACCATCCCTTGCTCATGACTTCCGTCGGAGCTCCGGAGTCGAATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGCTTTGATTAAGATTTGGGTTTTTTGGGCTGCTTTGGCCTTTTTGTTTTCGGCTGTTTTCTTTCTTGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.69

Weight (kDa)

5.52

Isoelectric Point (pI)

73.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	163
AfaI	GTAC	1 cut(s)	274
AluBI	AGCT	3 cut(s)	190, 347, 398
AluI	AGCT	3 cut(s)	190, 347, 398
Alw21I	GWGCWC	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	373, 425
BanII	GRGCYC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	360, 412
BccI	CCATC	1 cut(s)	327
BglII	AGATCT	5 cut(s)	10, 113, 182, 203, 242
BisI	GCNGC	2 cut(s)	374, 426
BlsI	GCNGC	2 cut(s)	375, 427
BoxI	GACNNNNGTC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BpuEI	CTTGAG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	144, 310
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse8I	GATNNNNATC	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	349
BseDI	CCNNGG	2 cut(s)	144, 310
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	22
BseMII	CTCAG	3 cut(s)	55, 79, 200
BseRI	GAGGAG	3 cut(s)	78, 152, 280
BseXI	GCAGC	2 cut(s)	360, 412
BshFI	GGCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	350
BsnI	GGCC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	5 cut(s)	10, 113, 182, 203, 242
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	3 cut(s)	54, 78, 199
BspEI	TCCGGA	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	144, 310
BssMI	GATC	5 cut(s)	10, 113, 182, 203, 242
BssT1I	CCWWGG	2 cut(s)	144, 310
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	144, 182
BstDEI	CTNAG	6 cut(s)	14, 29, 41, 65, 186, 200
BstDSI	CCRYGG	1 cut(s)	144
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	5 cut(s)	13, 116, 185, 206, 245
BstMBI	GATC	5 cut(s)	10, 113, 182, 203, 242
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 370, 431
BstPAI	GACNNNNGTC	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	360, 412
BstX2I	RGATCY	5 cut(s)	10, 113, 182, 203, 242
BstYI	RGATCY	5 cut(s)	10, 113, 182, 203, 242
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	319
CciI	TCATGA	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	3 cut(s)	55, 145, 331
CviJI	RGCY	8 cut(s)	190, 281, 347, 373, 398, 425, 434, 449
CviKI_1	RGCY	8 cut(s)	190, 281, 347, 373, 398, 425, 434, 449
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	6 cut(s)	14, 29, 41, 65, 186, 200
DpnI	GATC	5 cut(s)	12, 115, 184, 205, 244
DpnII	GATC	5 cut(s)	10, 113, 182, 203, 242
Eam1104I	CTCTTC	2 cut(s)	144, 182
EarI	CTCTTC	2 cut(s)	144, 182
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	2 cut(s)	144, 310
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	144, 310
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	144, 310
FaeI	CATG	3 cut(s)	58, 148, 334
FaiI	YATR	7 cut(s)	21, 56, 146, 237, 332, 367, 466
FatI	CATG	3 cut(s)	54, 144, 330
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	374, 426
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	2 cut(s)	374, 426
GluI	GCNGC	2 cut(s)	374, 426
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	3 cut(s)	58, 148, 334
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	3 cut(s)	23, 353, 358
HpaII	CCGG	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	109, 131
Hpy188I	TCNGA	2 cut(s)	182, 344
Hpy188III	TCNNGA	3 cut(s)	92, 331, 350
Hpy8I	GTNNAC	2 cut(s)	109, 131
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	168, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 370, 431
HpyF3I	CTNAG	6 cut(s)	14, 29, 41, 65, 186, 200
Hsp92II	CATG	3 cut(s)	58, 148, 334
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	10, 113, 182, 203, 242
LmnI	GCTCC	3 cut(s)	91, 344, 352
LpnPI	CCDG	1 cut(s)	363
Lsp1109I	GCAGC	2 cut(s)	360, 412
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	5 cut(s)	12, 115, 184, 205, 244
MboI	GATC	5 cut(s)	10, 113, 182, 203, 242
MboII	GAAGA	6 cut(s)	114, 161, 169, 237, 401, 404
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	5 cut(s)	10, 113, 182, 203, 242
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	322, 361
MnlI	CCTC	7 cut(s)	99, 170, 173, 185, 271, 298, 301
MroI	TCCGGA	1 cut(s)	349
MseI	TTAA	1 cut(s)	405
MspI	CCGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	196, 370, 431
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	5 cut(s)	10, 113, 182, 203, 242
NlaIII	CATG	3 cut(s)	58, 148, 334
PagI	TCATGA	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	23, 358
PkrI	GCNGC	2 cut(s)	375, 427
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PshAI	GACNNNNGTC	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	314
PsuI	RGATCY	5 cut(s)	10, 113, 182, 203, 242
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	374, 426
Sau3AI	GATC	5 cut(s)	10, 113, 182, 203, 242
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	6 cut(s)	136, 162, 177, 192, 349, 400
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	144, 310
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	356
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	23, 358
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseI	GCWGC	2 cut(s)	373, 425
TspDTI	ATGAA	2 cut(s)	36, 402
TspGWI	ACGGA	2 cut(s)	290, 328
XmiI	GTMKAC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.