RchiOBHm_Chr6g0289721

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
52831309 .. 52831756
448 bp
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UTR
Exon/CDS
Intron
PRQ25992

Sequence Viewer

Length: 447 bp
ATGAGAGTCGTGTATTGTTTCCCTTTAGTGAGAGAAGCTCCTGCTTCTCTCTTACCCAGGCTCTCTCTTCTCTGCAGCAACTTTTTCTTCTTTGATTTTCCTCACCCATGTGGTGATTCTCACCCAAGTGGTGTTTTGATTTCCTTGTTTTCCTCTTCTTTTGCATCTGATTTTTGTTCTCACTGTTCAAATATGTTTTTAGATCTTAGATCTGAATCTCTAAGATATACTCTCAGATTTGTTCTCATGGTCATTCTCAGTTTTTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACCGTGAACAAATCTCCTTCTTCTTGTCTACCTTGCCCTGCCATGGAAGAGTCCGTACTCCTCTGCAACCACCTCTTCAGATCTCAGGTTTCTTTGCTAAGATCTATTTTGGTTTGGTTGTTGTTATCCTTTTTATGCGAGATCTTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.69

Weight (kDa)

6.38

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 355
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 1 cut(s) 189
AjnI CCWGG 1 cut(s) 56
AleI CACNNNNGTG 2 cut(s) 108, 126
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 95, 113, 125
BarI GAAGNNNNNNTAC 2 cut(s) 333, 365
BbvI GCAGC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 73
BglII AGATCT 5 cut(s) 202, 209, 374, 395, 435
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 173
BplI GAGNNNNNCTC 3 cut(s) 22, 54, 425
BpuEI CTTGAG 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 56, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 214
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 56, 336
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 3 cut(s) 247, 271, 392
BseRI GAGGAG 2 cut(s) 270, 344
BseXI GCAGC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 337
Bsp143I GATC 5 cut(s) 202, 209, 374, 395, 435
Bsp19I CCATGG 1 cut(s) 336
BspCNI CTCAG 3 cut(s) 246, 270, 391
BspMAI CTGCAG 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 56, 336
BssMI GATC 5 cut(s) 202, 209, 374, 395, 435
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 185, 298
Bst6I CTCTTC 4 cut(s) 72, 160, 336, 374
BstDEI CTNAG 6 cut(s) 206, 221, 233, 257, 378, 392
BstDSI CCRYGG 1 cut(s) 336
BstKTI GATC 5 cut(s) 205, 212, 377, 398, 438
BstMBI GATC 5 cut(s) 202, 209, 374, 395, 435
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 87
BstX2I RGATCY 5 cut(s) 202, 209, 374, 395, 435
BstYI RGATCY 5 cut(s) 202, 209, 374, 395, 435
BtgI CCRYGG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 181
Csp6I GTAC 1 cut(s) 350
CviAII CATG 3 cut(s) 108, 247, 337
CviJI RGCY 2 cut(s) 38, 61
CviKI_1 RGCY 2 cut(s) 38, 61
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 6 cut(s) 206, 221, 233, 257, 378, 392
DpnI GATC 5 cut(s) 204, 211, 376, 397, 437
DpnII GATC 5 cut(s) 202, 209, 374, 395, 435
Eam1104I CTCTTC 4 cut(s) 72, 160, 336, 374
EarI CTCTTC 4 cut(s) 72, 160, 336, 374
Eco130I CCWWGG 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 111, 250, 340
FaiI YATR 6 cut(s) 109, 194, 228, 248, 338, 430
FatI CATG 3 cut(s) 107, 246, 336
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
Hin1II CATG 3 cut(s) 111, 250, 340
HinfI GANTC 4 cut(s) 6, 116, 215, 344
HphI GGTGA 3 cut(s) 95, 113, 125
Hpy166II GTNNAC 2 cut(s) 301, 323
Hpy188I TCNGA 4 cut(s) 169, 214, 236, 374
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 301, 323
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 185, 298
HpyCH4V TGCA 3 cut(s) 75, 164, 360
HpyF3I CTNAG 6 cut(s) 206, 221, 233, 257, 378, 392
Hsp92II CATG 3 cut(s) 111, 250, 340
Kzo9I GATC 5 cut(s) 202, 209, 374, 395, 435
LmnI GCTCC 2 cut(s) 43, 283
LpnPI CCDG 5 cut(s) 43, 54, 70, 345, 365
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 173
MalI GATC 5 cut(s) 204, 211, 376, 397, 437
MboI GATC 5 cut(s) 202, 209, 374, 395, 435
MboII GAAGA 7 cut(s) 59, 79, 147, 306, 353, 361, 430
MflI RGATCY 5 cut(s) 202, 209, 374, 395, 435
MlyI GAGTC 2 cut(s) 15, 353
MnlI CCTC 5 cut(s) 111, 163, 291, 365, 377
MslI CAYNNNNRTG 2 cut(s) 108, 126
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 336
NdeII GATC 5 cut(s) 202, 209, 374, 395, 435
NlaIII CATG 3 cut(s) 111, 250, 340
OliI CACNNNNGTG 2 cut(s) 108, 126
PfeI GAWTC 2 cut(s) 116, 215
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 2 cut(s) 14, 352
PpsI GAGTC 2 cut(s) 14, 352
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PstI CTGCAG 1 cut(s) 77
PsuI RGATCY 5 cut(s) 202, 209, 374, 395, 435
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 2 cut(s) 108, 126
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 5 cut(s) 202, 209, 374, 395, 435
SchI GAGTC 2 cut(s) 15, 353
ScrFI CCNGG 1 cut(s) 58
SetI ASST 4 cut(s) 40, 328, 369, 384
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 108, 126
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 185, 298
TfiI GAWTC 2 cut(s) 116, 215
TscAI CASTG 1 cut(s) 188
TseI GCWGC 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.