Rh7CG033700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004876
Physical Location & Seq
Forward (+)
2306611 .. 2308133
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG033700.1

Sequence Viewer

Length: 546 bp
ATGGCCACGGTCATCTTTAGCCTTGTGGCTCTATGTTTCTTGCTGTTTGCTGTTTTTGATTATTCAGATGGGAAGCCGCCTTGGTCTGGGGCTTTTATCTCTGCTTCTGTCGTCAACCCAGCGATCAGATTGGAGGTTGATGTCGTGGTGGATGGTATTCCAGATGCTTTTGTTGGATTCTGGCGGGGATCTGAAAAGGGTAACGACGCTCATGGTGGATTTCGGCGGGACTGGCCTCGGGTCGAGAAACTGCTGCATATATGGCGAAGTCTGTATACTTGGCCGTTGGCCAGAGATTGGGATCATCTTTTGAGATCAGGATCGGGATCGGAGCCGGCTGTCGACTTCGGGATTGGGAGTGGCTTCTGCTGCAGGCTGGTGGGGGAAGTGAAGATCTGTCTTGGTTGTCCAGGAATGATGTGGTGGGCTGGCGGCGGTGGTTGTTGGCTAAACACCCCATTTCAACCTGAAACACTGCTGATCACCATACATCCCAGCAGAACGTGCTGCCCGTGCAGCGTTTTATTGAGCATTTTCAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.88

Weight (kDa)

6.04

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AccI GTMKAC 2 cut(s) 275, 342
AciI CCGC 5 cut(s) 77, 184, 226, 432, 435
AclWI GGATC 4 cut(s) 196, 309, 328, 334
AcoI YGGCCR 3 cut(s) 3, 281, 288
AfiI CCNNNNNNNGG 2 cut(s) 86, 297
AgsI TTSAA 1 cut(s) 464
AjnI CCWGG 1 cut(s) 409
AlwI GGATC 4 cut(s) 196, 309, 328, 334
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 4 cut(s) 3, 233, 281, 288
ApeKI GCWGC 4 cut(s) 253, 369, 507, 516
AsuHPI GGTGA 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 237
BalI TGGCCA 2 cut(s) 5, 290
BarI GAAGNNNNNNTAC 2 cut(s) 259, 291
BbvI GCAGC 4 cut(s) 240, 356, 494, 528
BccI CCATC 2 cut(s) 62, 146
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 370
BglII AGATCT 1 cut(s) 393
BisI GCNGC 6 cut(s) 77, 254, 370, 433, 508, 517
BlsI GCNGC 6 cut(s) 78, 255, 371, 434, 509, 518
Bme1390I CCNGG 1 cut(s) 411
BmeT110I CYCGRG 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 154
BsaBI GATNNNNATC 3 cut(s) 300, 319, 325
BsaJI CCNNGG 3 cut(s) 6, 80, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 297
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 236
Bse8I GATNNNNATC 3 cut(s) 300, 319, 325
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 6, 80, 236
BseGI GGATG 2 cut(s) 157, 490
BseJI GATNNNNATC 3 cut(s) 300, 319, 325
BseLI CCNNNNNNNGG 2 cut(s) 86, 297
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 240, 356, 494, 528
BseYI CCCAGC 2 cut(s) 118, 494
BsgI GTGCAG 1 cut(s) 535
BshFI GGCC 4 cut(s) 5, 235, 283, 290
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 86, 297
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 4 cut(s) 5, 235, 283, 290
BsoBI CYCGRG 1 cut(s) 237
Bsp143I GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
BspACI CCGC 5 cut(s) 77, 184, 226, 432, 435
BspANI GGCC 4 cut(s) 5, 235, 283, 290
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 4 cut(s) 196, 309, 328, 334
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 6, 80, 236
BssMI GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
BssNAI GTATAC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 80
Bst1107I GTATAC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 504
BstC8I GCNNGC 3 cut(s) 336, 374, 430
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 157, 490
BstKTI GATC 8 cut(s) 126, 191, 304, 317, 323, 329, 396, 483
BstMBI GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
BstMWI GCNNNNNNNGC 6 cut(s) 232, 262, 369, 504, 513, 516
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 4 cut(s) 240, 356, 494, 528
BstX2I RGATCY 2 cut(s) 188, 393
BstYI RGATCY 2 cut(s) 188, 393
BstZ17I GTATAC 1 cut(s) 276
BsuRI GGCC 4 cut(s) 5, 235, 283, 290
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 157, 490
BtsI GCAGTG 1 cut(s) 473
BtsIMutI CAGTG 2 cut(s) 473, 544
Cac8I GCNNGC 3 cut(s) 336, 374, 430
Cfr10I RCCGGY 1 cut(s) 334
CseI GACGC 1 cut(s) 215
CviAII CATG 1 cut(s) 212
DpnI GATC 8 cut(s) 125, 190, 303, 316, 322, 328, 395, 482
DpnII GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
EaeI YGGCCR 3 cut(s) 3, 281, 288
Eco130I CCWWGG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 1 cut(s) 215
FaiI YATR 8 cut(s) 34, 213, 258, 260, 262, 276, 488, 544
FaqI GGGAC 1 cut(s) 242
FatI CATG 1 cut(s) 211
FauI CCCGC 2 cut(s) 177, 219
FbaI TGATCA 1 cut(s) 480
FblI GTMKAC 2 cut(s) 275, 342
Fnu4HI GCNGC 6 cut(s) 77, 254, 370, 433, 508, 517
FokI GGATG 2 cut(s) 164, 477
Fsp4HI GCNGC 6 cut(s) 77, 254, 370, 433, 508, 517
GluI GCNGC 6 cut(s) 77, 254, 370, 433, 508, 517
GsaI CCCAGC 2 cut(s) 122, 498
HaeIII GGCC 4 cut(s) 5, 235, 283, 290
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 215
HincII GTYRAC 2 cut(s) 115, 343
HindII GTYRAC 2 cut(s) 115, 343
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 3 cut(s) 115, 276, 343
Hpy188I TCNGA 4 cut(s) 67, 128, 193, 331
Hpy188III TCNNGA 5 cut(s) 161, 244, 318, 324, 349
Hpy8I GTNNAC 3 cut(s) 115, 276, 343
Hpy99I CGWCG 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 3 cut(s) 256, 372, 516
HpyF10VI GCNNNNNNNGC 6 cut(s) 232, 262, 369, 504, 513, 516
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 1 cut(s) 215
KroI GCCGGC 1 cut(s) 334
KroNI GCCGGC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
LmnI GCTCC 1 cut(s) 331
Lsp1109I GCAGC 4 cut(s) 240, 356, 494, 528
LweI GCATC 1 cut(s) 154
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 200
MalI GATC 8 cut(s) 125, 190, 303, 316, 322, 328, 395, 482
MboI GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
MboII GAAGA 1 cut(s) 403
MflI RGATCY 2 cut(s) 188, 393
MlsI TGGCCA 2 cut(s) 5, 290
MluNI TGGCCA 2 cut(s) 5, 290
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 127, 246
Mox20I TGGCCA 2 cut(s) 5, 290
MroNI GCCGGC 1 cut(s) 334
MscI TGGCCA 2 cut(s) 5, 290
Msp20I TGGCCA 2 cut(s) 5, 290
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 6 cut(s) 232, 262, 369, 504, 513, 516
NaeI GCCGGC 1 cut(s) 336
NdeII GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
NgoMIV GCCGGC 1 cut(s) 334
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 509
PdiI GCCGGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 6 cut(s) 78, 255, 371, 434, 509, 518
Psp6I CCWGG 1 cut(s) 409
PspFI CCCAGC 2 cut(s) 118, 494
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 333
PstI CTGCAG 1 cut(s) 374
PsuI RGATCY 2 cut(s) 188, 393
SalI GTCGAC 1 cut(s) 341
SatI GCNGC 6 cut(s) 77, 254, 370, 433, 508, 517
Sau3AI GATC 8 cut(s) 123, 188, 301, 314, 320, 326, 393, 480
ScrFI CCNGG 1 cut(s) 411
SetI ASST 3 cut(s) 138, 469, 506
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 370
SsiI CCGC 5 cut(s) 77, 184, 226, 432, 435
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 506
TaqI TCGA 2 cut(s) 243, 342
TauI GCSGC 2 cut(s) 79, 435
TfiI GAWTC 1 cut(s) 177
TscAI CASTG 2 cut(s) 480, 544
TseI GCWGC 4 cut(s) 253, 369, 507, 516
TspRI CASTG 2 cut(s) 480, 544
Van91I CCANNNNNTGG 1 cut(s) 297
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XmiI GTMKAC 2 cut(s) 275, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.