Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Forward (+)

21187014 .. 21187596

Gene Structure 583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGTTTCAGCCCTCACAAATCAAATTTGTTTTTAGATCTAGATCTGGACAGATTTGTTCTCATGGTCATTCTCAGTTTTTGTTCTCCCTTTGCTCCTCAAGATTCCCAAACCGTGAACAAATCTCCTTCTTCTTGTCTACCTTGTCCTGCCATGGAAGATTTCGTACACCTCTGCAACCACCTCTTCAGATCTCAGTTTTCTTTGCTAAGATCTATTGTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTTTCGTAATCGGTCAACTGGAGAATGTATGGCGGCTCTGTCCGTATCCTCACCTCTGCAGACCACCCTTGGTTACCAATCCTTGCTCGCGATTTCCGTCGGAGCTCCGGTGACGAATCTGCTATGGCGGCTGCAAAGTGGAGAGGAAGAAGAAGCTTTGATTAGGGCTTGGGTTTTGTTGGGCTGCTTGGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.75

Weight (kDa)

6.26

Isoelectric Point (pI)

88.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AccII	CGCG	1 cut(s)	344
AciI	CCGC	2 cut(s)	287, 382
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	168
AluBI	AGCT	2 cut(s)	359, 410
AluI	AGCT	2 cut(s)	359, 410
Alw21I	GWGCWC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	385, 438
ApoI	RAATTY	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	297, 376
BanII	GRGCYC	1 cut(s)	361
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	372, 425
BciVI	GTATCC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	310
BglII	AGATCT	5 cut(s)	37, 43, 191, 212, 251
BisI	GCNGC	4 cut(s)	288, 383, 386, 439
BlsI	GCNGC	4 cut(s)	289, 384, 387, 440
BpmI	CTGGAG	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	153, 322
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bse1I	ACTGG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	153, 322
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	88, 209
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	372, 425
Bsh1236I	CGCG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	37, 43, 191, 212, 251
Bsp19I	CCATGG	1 cut(s)	153
Bsp68I	TCGCGA	1 cut(s)	344
BspACI	CCGC	2 cut(s)	287, 382
BspCNI	CTCAG	2 cut(s)	87, 208
BspFNI	CGCG	1 cut(s)	344
BspMAI	CTGCAG	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	153, 322
BssMI	GATC	5 cut(s)	37, 43, 191, 212, 251
BssT1I	CCWWGG	2 cut(s)	153, 322
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	74, 195, 209
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	5 cut(s)	40, 46, 194, 215, 254
BstMBI	GATC	5 cut(s)	37, 43, 191, 212, 251
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 444
BstPI	GGTNACC	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	372, 425
BstX2I	RGATCY	5 cut(s)	37, 43, 191, 212, 251
BstYI	RGATCY	5 cut(s)	37, 43, 191, 212, 251
BsuI	GTATCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	153
BtuMI	TCGCGA	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	2 cut(s)	64, 154
CviJI	RGCY	8 cut(s)	12, 290, 359, 385, 410, 422, 438, 447
CviKI_1	RGCY	8 cut(s)	12, 290, 359, 385, 410, 422, 438, 447
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	3 cut(s)	74, 195, 209
DpnI	GATC	5 cut(s)	39, 45, 193, 214, 253
DpnII	GATC	5 cut(s)	37, 43, 191, 212, 251
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	153, 322
Eco24I	GRGCYC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	153, 322
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	153, 322
FaeI	CATG	2 cut(s)	67, 157
FaiI	YATR	5 cut(s)	65, 155, 246, 284, 379
FatI	CATG	2 cut(s)	63, 153
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	288, 383, 386, 439
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	4 cut(s)	288, 383, 386, 439
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	4 cut(s)	288, 383, 386, 439
GsuI	CTGGAG	1 cut(s)	294
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	2 cut(s)	67, 157
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	2 cut(s)	104, 370
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	297, 376
Hpy166II	GTNNAC	4 cut(s)	118, 140, 169, 270
Hpy188I	TCNGA	2 cut(s)	191, 356
Hpy188III	TCNNGA	4 cut(s)	41, 47, 101, 343
Hpy8I	GTNNAC	4 cut(s)	118, 140, 169, 270
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	177, 313, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 444
HpyF3I	CTNAG	3 cut(s)	74, 195, 209
Hsp92II	CATG	2 cut(s)	67, 157
Kzo9I	GATC	5 cut(s)	37, 43, 191, 212, 251
LmnI	GCTCC	3 cut(s)	100, 356, 364
LpnPI	CCDG	4 cut(s)	32, 162, 258, 375
Lsp1109I	GCAGC	2 cut(s)	372, 425
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	326, 364
MalI	GATC	5 cut(s)	39, 45, 193, 214, 253
MboI	GATC	5 cut(s)	37, 43, 191, 212, 251
MboII	GAAGA	5 cut(s)	123, 170, 178, 413, 416
MflI	RGATCY	5 cut(s)	37, 43, 191, 212, 251
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	7 cut(s)	24, 108, 182, 194, 313, 318, 391
MspI	CCGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	382, 444
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	5 cut(s)	37, 43, 191, 212, 251
NlaIII	CATG	2 cut(s)	67, 157
NmuCI	GTSAC	1 cut(s)	364
NruI	TCGCGA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	104, 370
PkrI	GCNGC	4 cut(s)	289, 384, 387, 440
Psp124BI	GAGCTC	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	5 cut(s)	37, 43, 191, 212, 251
RruI	TCGCGA	1 cut(s)	344
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	361
SatI	GCNGC	4 cut(s)	288, 383, 386, 439
Sau3AI	GATC	5 cut(s)	37, 43, 191, 212, 251
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	6 cut(s)	145, 174, 186, 310, 361, 412
SfcI	CTRYAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	2 cut(s)	287, 382
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	153, 322
TaaI	ACNGT	1 cut(s)	115
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	25
TauI	GCSGC	2 cut(s)	290, 385
TfiI	GAWTC	2 cut(s)	104, 370
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	2 cut(s)	385, 438
Tsp45I	GTSAC	1 cut(s)	364
TspGWI	ACGGA	2 cut(s)	286, 340
XapI	RAATTY	1 cut(s)	25
XbaI	TCTAGA	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.