Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Forward (+)

46884835 .. 46895174

Gene Structure 10340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG255300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCGATCTACATGCGCTTCATCCAGCTTTGTGGCGGCAAGGCCTGCGTCAATCCCGAGAGCGTGCTCGCCCAGAGAGCTATTCAACTCTGGCAGATCAGAATCTCTGGCCGGAAAGCCAACTACCTCCATGACTTGGCCAGGAAGTACCAGAATGGAATTCTCTCTGATGCTGCTATTGTAAATATGGACGACAAGTCGTCGTTCACGATGCTGACCATGGGTTACTCGGCAGTCTTCCATTGTCGACAAAACTCCCAAAATTCCCAAAACTTGATGGCCACGGTCATCTTTAGCCTTGTGGCTCTATTTTTCTTGCTGTTTGCTGTGTTTGATTGTTCAGATGGGAAGCCGCCTTGGTCTGGGGCTTCTATTTCCCCTTCTGTCGTCAACCAATTGGAGGTTGATGTCGTGGTGGACGTGTTGGTGGCTGGAATATCCGGTGACCCTCCGCTCTGGTTGGGTGCTTGGGCCCAAAAACTGGATGTGACTACGAGTCAAAGTTCCATGGGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

172

Amino Acids

18.83

Weight (kDa)

6.7

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	136, 481
AccBSI	CCGCTC	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	3 cut(s)	36, 353, 452
AcoI	YGGCCR	3 cut(s)	109, 138, 279
AcsI	RAATTY	2 cut(s)	159, 262
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	4 cut(s)	136, 362, 400, 481
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	86
AhdI	GACNNNNNGTC	3 cut(s)	196, 199, 495
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	28, 80
AluI	AGCT	2 cut(s)	28, 80
Alw21I	GWGCWC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	5 cut(s)	42, 109, 138, 279, 471
ApaI	GGGCCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	159, 262
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	471, 472
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	475
BalI	TGGCCA	2 cut(s)	140, 281
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	271, 338
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	142
BisI	GCNGC	3 cut(s)	37, 174, 353
BlsI	GCNGC	3 cut(s)	38, 175, 354
Bme1390I	CCNGG	1 cut(s)	142
BmeRI	GACNNNNNGTC	3 cut(s)	196, 199, 495
BmeT110I	CYCGRG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	471, 472
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	2 cut(s)	160, 201
BpiI	GAAGAC	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	219, 282, 356, 507
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 362, 400, 481
Bse1I	ACTGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	4 cut(s)	219, 282, 356, 507
BseGI	GGATG	2 cut(s)	21, 490
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	4 cut(s)	136, 362, 400, 481
BseNI	ACTGG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	5 cut(s)	44, 111, 140, 281, 473
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	112, 441
BslI	CCNNNNNNNGG	4 cut(s)	136, 362, 400, 481
BsnI	GGCC	5 cut(s)	44, 111, 140, 281, 473
BsoBI	CYCGRG	1 cut(s)	56
Bsp120I	GGGCCC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	69, 475
Bsp143I	GATC	3 cut(s)	6, 96, 513
Bsp19I	CCATGG	2 cut(s)	219, 507
BspACI	CCGC	3 cut(s)	36, 353, 452
BspANI	GGCC	5 cut(s)	44, 111, 140, 281, 473
BspLI	GGNNCC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	4 cut(s)	219, 282, 356, 507
BssMI	GATC	3 cut(s)	6, 96, 513
BssT1I	CCWWGG	3 cut(s)	219, 356, 507
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	46, 65, 69
BstDSI	CCRYGG	3 cut(s)	219, 282, 507
BstEII	GGTNACC	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	21, 490
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	3 cut(s)	9, 99, 516
BstMBI	GATC	3 cut(s)	6, 96, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 77
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	16
BstPI	GGTNACC	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	513
BsuRI	GGCC	5 cut(s)	44, 111, 140, 281, 473
BtgI	CCRYGG	3 cut(s)	219, 282, 507
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	21, 490
Cac8I	GCNNGC	3 cut(s)	46, 65, 69
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	471, 472
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	13, 131, 220, 508
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	3 cut(s)	8, 98, 515
DpnII	GATC	3 cut(s)	6, 96, 513
DriI	GACNNNNNGTC	3 cut(s)	196, 199, 495
EaeI	YGGCCR	3 cut(s)	109, 138, 279
Eam1105I	GACNNNNNGTC	3 cut(s)	196, 199, 495
Eco130I	CCWWGG	3 cut(s)	219, 356, 507
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	3 cut(s)	219, 356, 507
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	3 cut(s)	219, 356, 507
FaeI	CATG	4 cut(s)	16, 134, 223, 511
FaiI	YATR	5 cut(s)	14, 132, 188, 221, 509
FatI	CATG	4 cut(s)	12, 130, 219, 507
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	37, 174, 353
FokI	GGATG	2 cut(s)	8, 497
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	3 cut(s)	37, 174, 353
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	37, 174, 353
HaeIII	GGCC	5 cut(s)	44, 111, 140, 281, 473
HapII	CCGG	2 cut(s)	112, 441
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	16, 134, 223, 511
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	2 cut(s)	248, 391
HindII	GTYRAC	2 cut(s)	248, 391
HinfI	GANTC	2 cut(s)	102, 496
HpaII	CCGG	2 cut(s)	112, 441
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	4 cut(s)	207, 248, 391, 418
Hpy188I	TCNGA	4 cut(s)	101, 169, 343, 518
Hpy188III	TCNNGA	2 cut(s)	56, 208
Hpy8I	GTNNAC	4 cut(s)	207, 248, 391, 418
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 77
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	16, 134, 223, 511
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	6, 96, 513
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	160, 201
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	224, 443, 487
MalI	GATC	3 cut(s)	8, 98, 515
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	3 cut(s)	6, 96, 513
MboII	GAAGA	1 cut(s)	229
MfeI	CAATTG	1 cut(s)	395
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	69, 475
MlsI	TGGCCA	2 cut(s)	140, 281
MluCI	AATT	3 cut(s)	159, 262, 395
MluNI	TGGCCA	2 cut(s)	140, 281
MlyI	GAGTC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	137, 394, 459
Mox20I	TGGCCA	2 cut(s)	140, 281
MscI	TGGCCA	2 cut(s)	140, 281
Msp20I	TGGCCA	2 cut(s)	140, 281
MspI	CCGG	2 cut(s)	112, 441
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	45, 77
NcoI	CCATGG	2 cut(s)	219, 507
NdeII	GATC	3 cut(s)	6, 96, 513
NlaIII	CATG	4 cut(s)	16, 134, 223, 511
NlaIV	GGNNCC	1 cut(s)	473
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	443, 487
NspI	RCATGY	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 417
PfeI	GAWTC	1 cut(s)	102
PflMI	CCANNNNNTGG	2 cut(s)	136, 481
PkrI	GCNGC	3 cut(s)	38, 175, 354
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	140
PspEI	GGTNACC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	473
PspOMI	GGGCCC	1 cut(s)	471
PspPI	GGNCC	2 cut(s)	471, 472
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	246
SatI	GCNGC	3 cut(s)	37, 174, 353
Sau3AI	GATC	3 cut(s)	6, 96, 513
Sau96I	GGNCC	2 cut(s)	471, 472
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	69, 475
SetI	ASST	5 cut(s)	30, 82, 129, 405, 423
SfaNI	GCATC	2 cut(s)	160, 201
Sse9I	AATT	3 cut(s)	159, 262, 395
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	3 cut(s)	36, 353, 452
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	3 cut(s)	219, 356, 507
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	5, 247
TasI	AATT	3 cut(s)	159, 262, 395
TauI	GCSGC	2 cut(s)	39, 355
TfiI	GAWTC	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	443, 487
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	2 cut(s)	443, 487
TspDTI	ATGAA	1 cut(s)	10
Van91I	CCANNNNNTGG	2 cut(s)	136, 481
XapI	RAATTY	2 cut(s)	159, 262
XceI	RCATGY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.