Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001395.1

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Reverse (-)

91571 .. 93461

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001395.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggtcattcttagtttttgttctttctttgctcctcaagatgtccaaaccgtgaacaaatctccttcttcttgtctaccttgccctgccgtggaagagttcgtactcctgtgcaaccacctcttcagatctcaagtttctttgctaagatctattttggtttggttgttgttattcctctatgcgagatcttctcgtaatcagtcaaccggagaatgtatggcggctctgtccgtatcctcacctctgcagaccacccttggttaccaatcctcgcccacgatttccgtcggagctccggccagcgagcctgttgtcgctaccactgtcctcaacacagtggaaagtggagaaagagaggctttcgttgcgaagcctattccagagggagcgacctccgaggtaaggttctctatcatcttggagaacattgaaaatcatcgcaagaagatagtcgctgatttcgaaagggagactgcgaagacagatcagctcatacgtgaactagaccagcgcattacccgacatgcagaggatactgaacaacagattgcacaatcagagaatgcagtaagggcccatgccgccagtatcgctagcgagcagaatcagtgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.55

Weight (kDa)

5.27

Isoelectric Point (pI)

69.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	2 cut(s)	224, 585
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	91, 405
AgsI	TTSAA	1 cut(s)	434
AluBI	AGCT	2 cut(s)	296, 493
AluI	AGCT	2 cut(s)	296, 493
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	467
AoxI	GGCC	2 cut(s)	300, 576
ApaI	GGGCCC	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	576, 577
AsuHPI	GGTGA	1 cut(s)	234
AsuII	TTCGAA	1 cut(s)	465
AsuNHI	GCTAGC	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	580
BanII	GRGCYC	2 cut(s)	298, 580
BarI	GAAGNNNNNNTAC	2 cut(s)	87, 119
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	74
BciVI	GTATCC	2 cut(s)	247, 529
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	3 cut(s)	506, 597, 616
BfmI	CTRYAG	1 cut(s)	248
BfuI	GTATCC	2 cut(s)	247, 529
BglII	AGATCT	3 cut(s)	128, 149, 188
BisI	GCNGC	2 cut(s)	225, 585
BlsI	GCNGC	2 cut(s)	226, 586
BmgT120I	GGNCC	2 cut(s)	576, 577
BmiI	GGNNCC	1 cut(s)	578
BmtI	GCTAGC	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu14I	TTCGAA	1 cut(s)	465
BpuEI	CTTGAG	2 cut(s)	21, 117
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	90, 259, 399
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 405
Bse1I	ACTGG	1 cut(s)	588
BseDI	CCNNGG	3 cut(s)	90, 259, 399
BseLI	CCNNNNNNNGG	2 cut(s)	91, 405
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	580
BshFI	GGCC	2 cut(s)	302, 578
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	210, 299
BslI	CCNNNNNNNGG	2 cut(s)	91, 405
BsmAI	GTCTC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	2 cut(s)	302, 578
Bsp119I	TTCGAA	1 cut(s)	465
Bsp120I	GGGCCC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	298, 580
Bsp143I	GATC	4 cut(s)	128, 149, 188, 487
BspACI	CCGC	2 cut(s)	224, 585
BspANI	GGCC	2 cut(s)	302, 578
BspLI	GGNNCC	1 cut(s)	578
BspMAI	CTGCAG	1 cut(s)	252
BspOI	GCTAGC	1 cut(s)	600
BspT104I	TTCGAA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	3 cut(s)	90, 259, 399
BssMI	GATC	4 cut(s)	128, 149, 188, 487
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	52, 328, 340
Bst6I	CTCTTC	2 cut(s)	90, 128
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	4 cut(s)	304, 308, 598, 602
BstDEI	CTNAG	2 cut(s)	11, 146
BstDSI	CCRYGG	1 cut(s)	90
BstEII	GGTNACC	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	4 cut(s)	131, 152, 191, 490
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	128, 149, 188, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 575, 584, 593
BstNSI	RCATGY	1 cut(s)	530
BstPI	GGTNACC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	3 cut(s)	128, 149, 188
BstYI	RGATCY	3 cut(s)	128, 149, 188
BsuI	GTATCC	2 cut(s)	247, 529
BsuRI	GGCC	2 cut(s)	302, 578
BtgI	CCRYGG	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	425
BtsIMutI	CAGTG	3 cut(s)	324, 345, 617
Cac8I	GCNNGC	4 cut(s)	304, 308, 598, 602
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	2 cut(s)	576, 577
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	527, 581
CviJI	RGCY	8 cut(s)	227, 296, 302, 310, 362, 376, 493, 578
CviKI_1	RGCY	8 cut(s)	227, 296, 302, 310, 362, 376, 493, 578
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	11, 146
DpnI	GATC	4 cut(s)	130, 151, 190, 489
DpnII	GATC	4 cut(s)	128, 149, 188, 487
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	90, 128
EarI	CTCTTC	2 cut(s)	90, 128
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	298, 580
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	298, 580
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	530, 584
FaiI	YATR	5 cut(s)	183, 221, 497, 528, 582
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FatI	CATG	2 cut(s)	526, 580
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	225, 585
FriOI	GRGCYC	2 cut(s)	298, 580
Fsp4HI	GCNGC	2 cut(s)	225, 585
FspBI	CTAG	3 cut(s)	506, 597, 616
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	2 cut(s)	225, 585
HaeIII	GGCC	2 cut(s)	302, 578
HapII	CCGG	2 cut(s)	210, 299
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	2 cut(s)	530, 584
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	210, 299
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	4 cut(s)	55, 77, 207, 503
Hpy188I	TCNGA	4 cut(s)	128, 293, 400, 562
Hpy188III	TCNNGA	2 cut(s)	38, 383
Hpy8I	GTNNAC	4 cut(s)	55, 77, 207, 503
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	3 cut(s)	52, 328, 340
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	5 cut(s)	114, 250, 530, 554, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 575, 584, 593
HpyF3I	CTNAG	2 cut(s)	11, 146
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	530, 584
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	128, 149, 188, 487
LmnI	GCTCC	4 cut(s)	37, 293, 301, 389
LpnPI	CCDG	9 cut(s)	99, 122, 223, 312, 316, 324, 396, 524, 601
MaeI	CTAG	3 cut(s)	506, 597, 616
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	130, 151, 190, 489
MboI	GATC	4 cut(s)	128, 149, 188, 487
MboII	GAAGA	6 cut(s)	60, 107, 115, 183, 460, 493
MflI	RGATCY	3 cut(s)	128, 149, 188
MhlI	GDGCHC	2 cut(s)	298, 580
MmeI	TCCRAC	1 cut(s)	271
MspI	CCGG	2 cut(s)	210, 299
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	4 cut(s)	368, 575, 584, 593
NdeII	GATC	4 cut(s)	128, 149, 188, 487
NheI	GCTAGC	1 cut(s)	596
NlaIII	CATG	2 cut(s)	530, 584
NlaIV	GGNNCC	1 cut(s)	578
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	226, 586
Ppu21I	YACGTR	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	578
PspOMI	GGGCCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	576, 577
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	3 cut(s)	128, 149, 188
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	298
SatI	GCNGC	2 cut(s)	225, 585
Sau3AI	GATC	4 cut(s)	128, 149, 188, 487
Sau96I	GGNCC	2 cut(s)	576, 577
SduI	GDGCHC	2 cut(s)	298, 580
SetI	ASST	9 cut(s)	82, 123, 247, 298, 398, 405, 410, 495, 502
SfcI	CTRYAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	465
SmlI	CTYRAG	2 cut(s)	36, 132
SmoI	CTYRAG	2 cut(s)	36, 132
SsiI	CCGC	2 cut(s)	224, 585
SspMI	CTAG	3 cut(s)	506, 597, 616
SstI	GAGCTC	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	52, 328, 340
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	465
TauI	GCSGC	2 cut(s)	227, 587
TfiI	GAWTC	1 cut(s)	607
TscAI	CASTG	3 cut(s)	331, 345, 617
TspGWI	ACGGA	2 cut(s)	223, 277
TspRI	CASTG	3 cut(s)	331, 345, 617
XceI	RCATGY	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	3 cut(s)	506, 597, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.