RLG00000034976

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004876
Physical Location & Seq
Forward (+)
58154700 .. 58155853
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034976

Sequence Viewer

Length: 501 bp
ATGTTGGTGGCTCTGGTGGTGACGTCTGTGGCACCAGAGTTGTGGCCGGCGGTGTGCTCCGACAGTCTACACAAGATGGCAAAGATCTTAGATCTGGATAGATTTGTTCTCATGGTCATTCTCAGTTTTTGTTCTTCCTTTGCTCCTCAAGATTCCCAAACCGTGAACAAATCTCCTTCTTCTTGTCTACCTTGTCCTGCCATGGAAGATTTCGTACACCTCTGCAACCACCTCTTCAGATCTCAGGTTTCTTTGCTAAGATCTATTTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTTTCGTAATCGGTCAACTGGAGCATGTATGGCGGCTCTGTCCGTATCCTCACCTCTGCAAACCACCCTTGGTTACCAATCCTTGCTCGCGATTTCCGTCGGAGCTCCGGTGACGAATCTGCTATGGCAGCTACAAAGTGGAGAGGAAGAAGAAGATTTGATTAGGGCTTGGGTTTTTTTGGGCTGCTTGGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.29

Weight (kDa)

5.84

Isoelectric Point (pI)

84.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 31
AccI GTMKAC 2 cut(s) 67, 187
AccII CGCG 1 cut(s) 392
AciI CCGC 2 cut(s) 50, 335
AcoI YGGCCR 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 216
AluBI AGCT 2 cut(s) 407, 433
AluI AGCT 2 cut(s) 407, 433
Alw21I GWGCWC 2 cut(s) 59, 409
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 430, 486
AsuHPI GGTGA 3 cut(s) 31, 345, 424
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 409
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
Bbv12I GWGCWC 2 cut(s) 59, 409
BbvI GCAGC 2 cut(s) 442, 473
BccI CCATC 1 cut(s) 70
BciVI GTATCC 1 cut(s) 358
BfuI GTATCC 1 cut(s) 358
BglII AGATCT 5 cut(s) 84, 91, 239, 260, 299
BisI GCNGC 3 cut(s) 336, 431, 487
BlsI GCNGC 3 cut(s) 337, 432, 488
BmiI GGNNCC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 201, 370
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 201, 370
BseMII CTCAG 2 cut(s) 136, 257
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 2 cut(s) 442, 473
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 59, 409
BsiSI CCGG 2 cut(s) 47, 410
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 59, 409
Bsp143I GATC 5 cut(s) 84, 91, 239, 260, 299
Bsp19I CCATGG 1 cut(s) 201
Bsp68I TCGCGA 1 cut(s) 392
BspACI CCGC 2 cut(s) 50, 335
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 135, 256
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 201, 370
BssMI GATC 5 cut(s) 84, 91, 239, 260, 299
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 201, 370
Bst4CI ACNGT 2 cut(s) 65, 163
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 48, 390
BstDEI CTNAG 4 cut(s) 88, 122, 243, 257
BstDSI CCRYGG 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 374
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 5 cut(s) 87, 94, 242, 263, 302
BstMBI GATC 5 cut(s) 84, 91, 239, 260, 299
BstMWI GCNNNNNNNGC 3 cut(s) 332, 430, 492
BstNSI RCATGY 1 cut(s) 330
BstPI GGTNACC 1 cut(s) 374
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 442, 473
BstX2I RGATCY 5 cut(s) 84, 91, 239, 260, 299
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 5 cut(s) 84, 91, 239, 260, 299
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 201
BtuMI TCGCGA 1 cut(s) 392
Cac8I GCNNGC 2 cut(s) 48, 390
Cfr10I RCCGGY 1 cut(s) 46
Csp6I GTAC 1 cut(s) 215
CviAII CATG 3 cut(s) 112, 202, 327
CviJI RGCY 8 cut(s) 11, 46, 338, 407, 433, 470, 486, 495
CviKI_1 RGCY 8 cut(s) 11, 46, 338, 407, 433, 470, 486, 495
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 4 cut(s) 88, 122, 243, 257
DpnI GATC 5 cut(s) 86, 93, 241, 262, 301
DpnII GATC 5 cut(s) 84, 91, 239, 260, 299
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 201, 370
Eco24I GRGCYC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 407
EcoO65I GGTNACC 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 201, 370
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 2 cut(s) 201, 370
FaeI CATG 3 cut(s) 115, 205, 330
FaiI YATR 6 cut(s) 113, 203, 294, 328, 332, 427
FatI CATG 3 cut(s) 111, 201, 326
FblI GTMKAC 2 cut(s) 67, 187
Fnu4HI GCNGC 3 cut(s) 336, 431, 487
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 3 cut(s) 336, 431, 487
GluI GCNGC 3 cut(s) 336, 431, 487
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 47, 410
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 115, 205, 330
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 2 cut(s) 152, 418
HpaII CCGG 2 cut(s) 47, 410
HphI GGTGA 3 cut(s) 31, 345, 424
Hpy166II GTNNAC 5 cut(s) 68, 166, 188, 217, 318
Hpy188I TCNGA 3 cut(s) 61, 239, 404
Hpy188III TCNNGA 3 cut(s) 95, 149, 391
Hpy8I GTNNAC 5 cut(s) 68, 166, 188, 217, 318
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 65, 163
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 225, 361
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 430, 492
HpyF3I CTNAG 4 cut(s) 88, 122, 243, 257
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 115, 205, 330
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Kzo9I GATC 5 cut(s) 84, 91, 239, 260, 299
LmnI GCTCC 5 cut(s) 62, 148, 323, 404, 412
LpnPI CCDG 7 cut(s) 48, 60, 80, 210, 230, 306, 423
Lsp1109I GCAGC 2 cut(s) 442, 473
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 3 cut(s) 19, 374, 412
MalI GATC 5 cut(s) 86, 93, 241, 262, 301
MboI GATC 5 cut(s) 84, 91, 239, 260, 299
MboII GAAGA 7 cut(s) 126, 171, 218, 226, 461, 464, 467
MflI RGATCY 5 cut(s) 84, 91, 239, 260, 299
MhlI GDGCHC 2 cut(s) 59, 409
MmeI TCCRAC 2 cut(s) 84, 382
MnlI CCTC 6 cut(s) 156, 230, 242, 361, 366, 439
MroNI GCCGGC 1 cut(s) 46
MseI TTAA 1 cut(s) 499
MspI CCGG 2 cut(s) 47, 410
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 3 cut(s) 332, 430, 492
NaeI GCCGGC 1 cut(s) 48
NcoI CCATGG 1 cut(s) 201
NdeII GATC 5 cut(s) 84, 91, 239, 260, 299
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 3 cut(s) 115, 205, 330
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 19, 412
NruI TCGCGA 1 cut(s) 392
NspI RCATGY 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdiI GCCGGC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 152, 418
PkrI GCNGC 3 cut(s) 337, 432, 488
Psp124BI GAGCTC 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 33
PsuI RGATCY 5 cut(s) 84, 91, 239, 260, 299
RruI TCGCGA 1 cut(s) 392
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 499
SatI GCNGC 3 cut(s) 336, 431, 487
Sau3AI GATC 5 cut(s) 84, 91, 239, 260, 299
SduI GDGCHC 2 cut(s) 59, 409
SetI ASST 8 cut(s) 26, 193, 222, 234, 249, 358, 409, 435
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SsiI CCGC 2 cut(s) 50, 335
SstI GAGCTC 1 cut(s) 409
StyI CCWWGG 2 cut(s) 201, 370
TaaI ACNGT 2 cut(s) 65, 163
TaiI ACGT 1 cut(s) 26
TaqII GACCGA 1 cut(s) 303
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 152, 418
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TseFI GTSAC 2 cut(s) 19, 412
TseI GCWGC 2 cut(s) 430, 486
Tsp45I GTSAC 2 cut(s) 19, 412
TspGWI ACGGA 2 cut(s) 334, 388
XceI RCATGY 1 cut(s) 330
XmiI GTMKAC 2 cut(s) 67, 187
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.