RchiOBHm_Chr2g0108911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004876
Physical Location & Seq
Reverse (-)
20368515 .. 20369452
938 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48277

Sequence Viewer

Length: 576 bp
ATGGCCACGGTCATCTTTAGCCTTGTGGCTCTATTGTTCTTACTGTTTGCTGTTCTTGATTATTCAGATGGGAAGCCGCCTTGGTCTGGGGCTTCTATTTCTTCTTCTGTCGTCAACCAAGAGATCCTATTGGAGGTTGATGTCGTGGTGGATGGGTTGGTGGCTGGTATTCCAGATGCTTTTGTTGGATTTCAGTGGGGATCGGAAAAGGGAAACGACGCTCATGGTGGATTTCGGCGGGACTGGCCTCGGTTCGAGGAACTGCTGCATCTATGGCGAAGTTCGTATCCTTGGCGGCTGGCCGGAGATTGGGATCGTCTTTTGAGATCAGGATCGGGATCGGGATCGGAGCCGGCTGTCGACTTCAGGGTCGGGAGTGGCTTCTGCTGCAAGTTGGTGGGGGAAGTGAAGATCCGTCTTGGTCGCCCAGGAATGATGTGGTGGGCTGGCGGCGGCAGTTGTGGGGTGTTCCCCTCTACTGGTATCGGCGACGGCGTATCTGGTGGTTGTTGGGTGGAAGAACACATATGGGCTCAAGGGGGGTGTTTCGTTTTTGTATTGCTTGCTGAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.63

Weight (kDa)

4.87

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 574
AasI GACNNNNNNGTC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 360
AciI CCGC 5 cut(s) 77, 238, 295, 450, 453
AclWI GGATC 7 cut(s) 118, 208, 321, 340, 346, 352, 406
AcoI YGGCCR 2 cut(s) 3, 300
AcuI CTGAAG 1 cut(s) 349
AfiI CCNNNNNNNGG 4 cut(s) 86, 133, 309, 479
AjnI CCWGG 1 cut(s) 427
AlwI GGATC 7 cut(s) 118, 208, 321, 340, 346, 352, 406
AoxI GGCC 3 cut(s) 3, 245, 300
ApeKI GCWGC 2 cut(s) 265, 387
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 535
BbvI GCAGC 2 cut(s) 252, 374
BccI CCATC 2 cut(s) 62, 146
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 297
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 6 cut(s) 77, 266, 296, 388, 451, 454
BlsI GCNGC 6 cut(s) 78, 267, 297, 389, 452, 455
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 166, 277
BpuEI CTTGAG 1 cut(s) 519
BsaBI GATNNNNATC 4 cut(s) 312, 331, 337, 343
BsaJI CCNNGG 5 cut(s) 6, 80, 248, 290, 427
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 133, 309, 479
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 248, 484
Bse8I GATNNNNATC 4 cut(s) 312, 331, 337, 343
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 5 cut(s) 6, 80, 248, 290, 427
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 4 cut(s) 312, 331, 337, 343
BseLI CCNNNNNNNGG 4 cut(s) 86, 133, 309, 479
BseNI ACTGG 2 cut(s) 248, 484
BseXI GCAGC 2 cut(s) 252, 374
BshFI GGCC 3 cut(s) 5, 247, 302
BsiSI CCGG 2 cut(s) 303, 353
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 86, 133, 309, 479
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 5, 247, 302
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
BspACI CCGC 5 cut(s) 77, 238, 295, 450, 453
BspANI GGCC 3 cut(s) 5, 247, 302
BspLI GGNNCC 1 cut(s) 351
BspPI GGATC 7 cut(s) 118, 208, 321, 340, 346, 352, 406
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 2 cut(s) 248, 484
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 5 cut(s) 6, 80, 248, 290, 427
BssMI GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
BssT1I CCWWGG 2 cut(s) 80, 290
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 10, 45
BstC8I GCNNGC 4 cut(s) 300, 354, 448, 564
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 8 cut(s) 126, 203, 316, 329, 335, 341, 347, 414
BstMBI GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
BstMWI GCNNNNNNNGC 3 cut(s) 244, 274, 387
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 252, 374
BstX2I RGATCY 2 cut(s) 123, 411
BstYI RGATCY 2 cut(s) 123, 411
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 5, 247, 302
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 4 cut(s) 300, 354, 448, 564
Cfr10I RCCGGY 1 cut(s) 352
CseI GACGC 1 cut(s) 227
CviAII CATG 1 cut(s) 224
DpnI GATC 8 cut(s) 125, 202, 315, 328, 334, 340, 346, 413
DpnII GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 3, 300
Eco130I CCWWGG 2 cut(s) 80, 290
Eco24I GRGCYC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 80, 290
EcoT38I GRGCYC 1 cut(s) 535
ErhI CCWWGG 2 cut(s) 80, 290
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 225, 274, 527, 529, 574
FaqI GGGAC 1 cut(s) 254
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 527
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 6 cut(s) 77, 266, 296, 388, 451, 454
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 6 cut(s) 77, 266, 296, 388, 451, 454
GluI GCNGC 6 cut(s) 77, 266, 296, 388, 451, 454
HaeIII GGCC 3 cut(s) 5, 247, 302
HapII CCGG 2 cut(s) 303, 353
HgaI GACGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 2 cut(s) 115, 361
HindII GTYRAC 2 cut(s) 115, 361
HpaII CCGG 2 cut(s) 303, 353
Hpy166II GTNNAC 2 cut(s) 115, 361
Hpy188I TCNGA 3 cut(s) 67, 205, 349
Hpy188III TCNNGA 6 cut(s) 56, 173, 330, 336, 342, 373
Hpy8I GTNNAC 2 cut(s) 115, 361
Hpy99I CGWCG 2 cut(s) 221, 494
HpyCH4III ACNGT 2 cut(s) 10, 45
HpyCH4V TGCA 2 cut(s) 268, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 274, 387
Hsp92II CATG 1 cut(s) 227
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Kzo9I GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 252, 374
LweI GCATC 2 cut(s) 166, 277
MalI GATC 8 cut(s) 125, 202, 315, 328, 334, 340, 346, 413
MboI GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
MboII GAAGA 4 cut(s) 93, 96, 421, 530
MflI RGATCY 2 cut(s) 123, 411
MhlI GDGCHC 1 cut(s) 535
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 569
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 127, 250, 258, 484
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 352
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 303, 353
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 244, 274, 387
NaeI GCCGGC 1 cut(s) 354
NdeI CATATG 1 cut(s) 527
NdeII GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 354
PkrI GCNGC 6 cut(s) 78, 267, 297, 389, 452, 455
PsiI TTATAA 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 351
PsuI RGATCY 2 cut(s) 123, 411
SalI GTCGAC 1 cut(s) 359
SatI GCNGC 6 cut(s) 77, 266, 296, 388, 451, 454
Sau3AI GATC 8 cut(s) 123, 200, 313, 326, 332, 338, 344, 411
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 535
SetI ASST 1 cut(s) 138
SfaNI GCATC 2 cut(s) 166, 277
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 1 cut(s) 569
SsiI CCGC 5 cut(s) 77, 238, 295, 450, 453
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 2 cut(s) 80, 290
TaaI ACNGT 2 cut(s) 10, 45
TaqI TCGA 2 cut(s) 255, 360
TasI AATT 1 cut(s) 569
TauI GCSGC 4 cut(s) 79, 298, 453, 456
TscAI CASTG 1 cut(s) 200
TseI GCWGC 2 cut(s) 265, 387
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.