RchiOBHm_Chr7g0222001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004876
Physical Location & Seq
Reverse (-)
43101672 .. 43102446
775 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19865

Sequence Viewer

Length: 252 bp
ATGGTCATTCTCAGTTTTTGTTCTCCCTTTGCTCCTCAAGATTCCCAAACCGTGAACAAATCTCCTTCTTCTTGTCTACCTTGTCCTGCCATGGAAGATTTCGTACACCTCTGCAACCACCTCTTCAGATCTCAGTTTTCTTTGCTAAGATCTATTGTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTTTCGTAATCGGTCAACTGGAGAATGTATGGCGGCTCTGTCCGTATCCTCACCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.27

Weight (kDa)

8.4

Isoelectric Point (pI)

107.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 76
AciI CCGC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BciVI GTATCC 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 248
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 3 cut(s) 128, 149, 188
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 25, 146
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 24
Bsp143I GATC 3 cut(s) 128, 149, 188
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 24, 145
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 128, 149, 188
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 128
BstDEI CTNAG 3 cut(s) 11, 132, 146
BstDSI CCRYGG 1 cut(s) 90
BstKTI GATC 3 cut(s) 131, 152, 191
BstMBI GATC 3 cut(s) 128, 149, 188
BstSFI CTRYAG 1 cut(s) 248
BstX2I RGATCY 3 cut(s) 128, 149, 188
BstYI RGATCY 3 cut(s) 128, 149, 188
BsuI GTATCC 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 91
CviJI RGCY 1 cut(s) 227
CviKI_1 RGCY 1 cut(s) 227
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 3 cut(s) 11, 132, 146
DpnI GATC 3 cut(s) 130, 151, 190
DpnII GATC 3 cut(s) 128, 149, 188
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 92, 183, 221
FatI CATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 231
Hin1II CATG 1 cut(s) 94
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 1 cut(s) 41
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 4 cut(s) 55, 77, 106, 207
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 4 cut(s) 55, 77, 106, 207
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 3 cut(s) 11, 132, 146
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 3 cut(s) 128, 149, 188
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 2 cut(s) 99, 195
MalI GATC 3 cut(s) 130, 151, 190
MboI GATC 3 cut(s) 128, 149, 188
MboII GAAGA 3 cut(s) 60, 107, 115
MflI RGATCY 3 cut(s) 128, 149, 188
MnlI CCTC 4 cut(s) 45, 119, 131, 250
NcoI CCATGG 1 cut(s) 90
NdeII GATC 3 cut(s) 128, 149, 188
NlaIII CATG 1 cut(s) 94
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 226
PsuI RGATCY 3 cut(s) 128, 149, 188
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 128, 149, 188
SetI ASST 4 cut(s) 82, 111, 123, 247
SfcI CTRYAG 1 cut(s) 248
SgeI CNNG 8 cut(s) 50, 64, 84, 93, 98, 103, 198, 222
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SsiI CCGC 1 cut(s) 224
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 52
TaqII GACCGA 1 cut(s) 192
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.