RLG00000017534

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004876
Physical Location & Seq
Reverse (-)
17925879 .. 17926566
688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017534

Sequence Viewer

Length: 450 bp
ATGAAAAGCCGCCTTGGCCTGGGGCTTCCTTTTGTCGTCAACCAAGTGTTCCGATTGGAGGATGATGTCGTGGTGGACAGTTTGGTGGCTGGAATATCTGGTGCCCGTCTGCTCTGGGTGGGAGCTAGGGCTCGAAAACTGGATCTGAGTTCGGGTGGAAGCTTCACGGGGGATCCAATGGCGGATTGTTCTGTTGGGTTTCCGTCAGATGCTTTTGTTGGACTTCGAAGAGGGCTAGTCAAGGATAACGACGCTTTTGGTGGAAGTGCTGGTGGTGGTTGTGTAGATTTTGGGCTCCAGAGTTGTGGGACCTGCAATGGATTTTTGCTCAAGGTTGGGGCTATTGGGCCCGAGTTTGGATGTTGGACTCATTGTGGGCTGGATATTGGGCTACAAGGGTCCTTTGCTGAGCTAAGGTTGATTGGCATTTCTCAATTGGGCAGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.41

Weight (kDa)

5.71

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 101
AciI CCGC 2 cut(s) 10, 182
AclWI GGATC 3 cut(s) 150, 167, 180
AfiI CCNNNNNNNGG 3 cut(s) 19, 58, 356
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 3 cut(s) 125, 162, 412
AluI AGCT 3 cut(s) 125, 162, 412
AlwI GGATC 3 cut(s) 150, 167, 180
AlwNI CAGNNNCTG 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 2 cut(s) 16, 347
ApaI GGGCCC 1 cut(s) 351
AspS9I GGNCC 4 cut(s) 309, 347, 348, 399
AsuII TTCGAA 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 2 cut(s) 309, 399
BaeGI GKGCMC 2 cut(s) 106, 351
BamHI GGATCC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 3 cut(s) 133, 297, 351
BciT130I CCWGG 1 cut(s) 20
BfaI CTAG 2 cut(s) 126, 236
BfuAI ACCTGC 1 cut(s) 320
BglI GCCNNNNNGGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 10
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 2 cut(s) 309, 399
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 4 cut(s) 309, 347, 348, 399
BmiI GGNNCC 6 cut(s) 103, 174, 296, 310, 349, 400
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 413
Bpu1102I GCTNAGC 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 13, 19
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 58, 356
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 13, 19
BseGI GGATG 2 cut(s) 67, 365
BseLI CCNNNNNNNGG 3 cut(s) 19, 58, 356
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 137, 399
BseNI ACTGG 1 cut(s) 144
BseSI GKGCMC 2 cut(s) 106, 351
BshFI GGCC 2 cut(s) 18, 349
BshNI GGYRCC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 3 cut(s) 19, 58, 356
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 2 cut(s) 18, 349
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 226
Bsp120I GGGCCC 1 cut(s) 347
Bsp1286I GDGCHC 4 cut(s) 106, 133, 297, 351
Bsp143I GATC 2 cut(s) 142, 172
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 2 cut(s) 10, 182
BspANI GGCC 2 cut(s) 18, 349
BspCNI CTCAG 2 cut(s) 138, 400
BspLI GGNNCC 6 cut(s) 103, 174, 296, 310, 349, 400
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 3 cut(s) 150, 167, 180
BspT104I TTCGAA 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 13, 19
BssMI GATC 2 cut(s) 142, 172
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 223
BstBI TTCGAA 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 146, 408, 413
BstF5I GGATG 2 cut(s) 67, 365
BstKTI GATC 2 cut(s) 145, 175
BstMBI GATC 2 cut(s) 142, 172
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSLI GKGCMC 2 cut(s) 106, 351
BstX2I RGATCY 2 cut(s) 142, 172
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 2 cut(s) 142, 172
BsuRI GGCC 2 cut(s) 18, 349
BtsCI GGATG 2 cut(s) 67, 365
BveI ACCTGC 1 cut(s) 320
CaiI CAGNNNCTG 1 cut(s) 447
Cfr13I GGNCC 4 cut(s) 309, 347, 348, 399
CseI GACGC 1 cut(s) 260
DdeI CTNAG 3 cut(s) 146, 408, 413
DpnI GATC 2 cut(s) 144, 174
DpnII GATC 2 cut(s) 142, 172
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 3 cut(s) 133, 297, 351
Eco47I GGWCC 2 cut(s) 309, 399
Eco88I CYCGRG 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 309, 399
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 3 cut(s) 133, 297, 351
ErhI CCWWGG 1 cut(s) 13
FaqI GGGAC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 2 cut(s) 74, 372
FriOI GRGCYC 3 cut(s) 133, 297, 351
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 2 cut(s) 126, 236
GluI GCNGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 2 cut(s) 18, 349
HgaI GACGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 2 cut(s) 367, 444
Hpy166II GTNNAC 2 cut(s) 40, 76
Hpy188I TCNGA 4 cut(s) 53, 147, 208, 449
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 2 cut(s) 40, 76
Hpy99I CGWCG 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 3 cut(s) 146, 408, 413
Kzo9I GATC 2 cut(s) 142, 172
LmnI GCTCC 2 cut(s) 122, 300
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 126, 236
MalI GATC 2 cut(s) 144, 174
MboI GATC 2 cut(s) 142, 172
MboII GAAGA 1 cut(s) 240
MfeI CAATTG 1 cut(s) 434
MflI RGATCY 2 cut(s) 142, 172
MhlI GDGCHC 4 cut(s) 106, 133, 297, 351
MluCI AATT 1 cut(s) 434
MlyI GAGTC 2 cut(s) 361, 438
MmeI TCCRAC 2 cut(s) 199, 344
MnlI CCTC 2 cut(s) 52, 224
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 2 cut(s) 142, 172
NlaIV GGNNCC 6 cut(s) 103, 174, 296, 310, 349, 400
NspV TTCGAA 1 cut(s) 226
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 2 cut(s) 361, 438
PpsI GAGTC 2 cut(s) 361, 438
PpuMI RGGWCCY 2 cut(s) 309, 399
Psp5II RGGWCCY 2 cut(s) 309, 399
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 6 cut(s) 103, 174, 296, 310, 349, 400
PspOMI GGGCCC 1 cut(s) 347
PspPI GGNCC 4 cut(s) 309, 347, 348, 399
PspPPI RGGWCCY 2 cut(s) 309, 399
PstNI CAGNNNCTG 1 cut(s) 447
PsuI RGATCY 2 cut(s) 142, 172
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 142, 172
Sau96I GGNCC 4 cut(s) 309, 347, 348, 399
SchI GAGTC 2 cut(s) 361, 438
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 4 cut(s) 106, 133, 297, 351
SetI ASST 6 cut(s) 127, 164, 314, 336, 414, 419
SfaNI GCATC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 226
SinI GGWCC 2 cut(s) 309, 399
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 434
SsiI CCGC 2 cut(s) 10, 182
SspMI CTAG 2 cut(s) 126, 236
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 133, 226
TasI AATT 1 cut(s) 434
TauI GCSGC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 192
VpaK11BI GGWCC 2 cut(s) 309, 399
XspI CTAG 2 cut(s) 126, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.