Rroxscaffold_1G00032980

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
47412663 .. 47413884
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032980.1

Sequence Viewer

Length: 195 bp
ATGGCCACGGTCATCCTTAGCCTTGTGGCTCTATGTTTCTTGCTGTTTGCTGTGTTTGATTGTTCAGATGGGAAGCCGCCTCGGTCTGGGGCTTCTATTTCTCCTTCTGTCGTCAACCAATTGGAGGTTGATGTCGTGGTGGACGTGTTGGTGGCTGGAATATCCGGTGACCCTCCACACTGGTTGGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

6.59

Weight (kDa)

4.17

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 86, 124
AflIII ACRYGT 1 cut(s) 144
AjiI CACGTC 1 cut(s) 145
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 179
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 62
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmgBI CACGTC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 6, 80
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 124
Bse1I ACTGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 6, 80
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 86, 124
BseNI ACTGG 1 cut(s) 185
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 86, 124
BsnI GGCC 1 cut(s) 5
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 6, 80
Bst4CI ACNGT 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 17, 192
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 12
BstPI GGTNACC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 178
CspCI CAANNNNNGTGG 1 cut(s) 165
CviJI RGCY 6 cut(s) 5, 21, 29, 76, 92, 155
CviKI_1 RGCY 6 cut(s) 5, 21, 29, 76, 92, 155
DdeI CTNAG 2 cut(s) 17, 192
EaeI YGGCCR 1 cut(s) 3
Eco91I GGTNACC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 167
FaiI YATR 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 165
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 115, 142
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 115, 142
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 17, 192
HpySE526I ACGT 1 cut(s) 144
LpnPI CCDG 4 cut(s) 72, 141, 166, 178
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 167
MfeI CAATTG 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 90, 118, 183
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PkrI GCNGC 1 cut(s) 78
PspEI GGTNACC 1 cut(s) 167
SatI GCNGC 1 cut(s) 77
SetI ASST 2 cut(s) 129, 147
SgeI CNNG 9 cut(s) 19, 35, 52, 93, 99, 148, 157, 168, 177
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 77
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 147
TaqII GACCGA 1 cut(s) 72
TasI AATT 1 cut(s) 119
TauI GCSGC 1 cut(s) 79
TscAI CASTG 1 cut(s) 185
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspRI CASTG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.