RchiOBHm_Chr1g0351971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004876
Physical Location & Seq
Forward (+)
45112492 .. 45113523
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57772

Sequence Viewer

Length: 429 bp
ATGGTCATTCTCAGTTTCTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACCGTGAACAGATCTCCTTCTTCTTGTCTACCTTGCTTTGCCATGGAAGAGTTCGAACTCCTCTGCAACCACCTCTTCAGATCTCAGGTTTCTTTGCTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTAATCGGTCAACTGGAGAATGTATGGCGGCTCTGTCCGTATCCTCACCTCTGCTGACCACCCTTGGTTACCAGCCCTTGCTCATGACTTCCGTCGGAGCTCCGGAGTCGAATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGATGACCATGTGAATCATGCTTGTAGACTTCGTCTGTTTTGGGCCGTGTCCCTTGTACTGTTGTTTGGCTTTGTGCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

5.21

Isoelectric Point (pI)

82.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 76, 370
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 402
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 234
AsuII TTCGAA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 374
BciVI GTATCC 1 cut(s) 247
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 4 cut(s) 59, 128, 149, 188
BisI GCNGC 2 cut(s) 225, 323
BlsI GCNGC 2 cut(s) 226, 324
BmgT120I GGNCC 1 cut(s) 387
BoxI GACNNNNGTC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 90, 259
BsaWI WCCGGW 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 90, 259
BseMII CTCAG 2 cut(s) 25, 146
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 24, 98
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 298
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 4 cut(s) 59, 128, 149, 188
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 2 cut(s) 24, 145
BspEI TCCGGA 1 cut(s) 298
BspHI TCATGA 1 cut(s) 279
BspT104I TTCGAA 1 cut(s) 102
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 90, 259
BssMI GATC 4 cut(s) 59, 128, 149, 188
BssT1I CCWWGG 2 cut(s) 90, 259
Bst4CI ACNGT 2 cut(s) 52, 405
Bst6I CTCTTC 2 cut(s) 90, 128
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 11, 132, 146
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 263
BstKTI GATC 4 cut(s) 62, 131, 152, 191
BstMBI GATC 4 cut(s) 59, 128, 149, 188
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstPAI GACNNNNGTC 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 4 cut(s) 59, 128, 149, 188
BstYI RGATCY 4 cut(s) 59, 128, 149, 188
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 401
CviAII CATG 4 cut(s) 91, 280, 353, 362
CviJI RGCY 6 cut(s) 227, 271, 296, 322, 389, 414
CviKI_1 RGCY 6 cut(s) 227, 271, 296, 322, 389, 414
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 3 cut(s) 11, 132, 146
DpnI GATC 4 cut(s) 61, 130, 151, 190
DpnII GATC 4 cut(s) 59, 128, 149, 188
Eam1104I CTCTTC 2 cut(s) 90, 128
EarI CTCTTC 2 cut(s) 90, 128
Ecl136II GAGCTC 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 90, 259
Eco24I GRGCYC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 90, 259
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 2 cut(s) 90, 259
FaeI CATG 4 cut(s) 94, 283, 356, 365
FaiI YATR 7 cut(s) 92, 183, 221, 281, 316, 354, 363
FaqI GGGAC 1 cut(s) 379
FatI CATG 4 cut(s) 90, 279, 352, 361
FblI GTMKAC 2 cut(s) 76, 370
Fnu4HI GCNGC 2 cut(s) 225, 323
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 2 cut(s) 225, 323
GluI GCNGC 2 cut(s) 225, 323
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 389
HapII CCGG 1 cut(s) 299
Hin1II CATG 4 cut(s) 94, 283, 356, 365
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 3 cut(s) 302, 307, 358
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 4 cut(s) 55, 77, 207, 371
Hpy188I TCNGA 2 cut(s) 128, 293
Hpy188III TCNNGA 3 cut(s) 38, 280, 299
Hpy8I GTNNAC 4 cut(s) 55, 77, 207, 371
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 2 cut(s) 52, 405
HpyCH4V TGCA 2 cut(s) 114, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 3 cut(s) 11, 132, 146
Hsp92II CATG 4 cut(s) 94, 283, 356, 365
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 4 cut(s) 59, 128, 149, 188
LmnI GCTCC 3 cut(s) 37, 293, 301
LpnPI CCDG 4 cut(s) 119, 195, 281, 312
Lsp1109I GCAGC 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 263
MalI GATC 4 cut(s) 61, 130, 151, 190
MboI GATC 4 cut(s) 59, 128, 149, 188
MboII GAAGA 7 cut(s) 60, 107, 115, 183, 350, 353, 356
MflI RGATCY 4 cut(s) 59, 128, 149, 188
MhlI GDGCHC 1 cut(s) 298
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 271, 310
MnlI CCTC 5 cut(s) 45, 119, 131, 250, 255
MroI TCCGGA 1 cut(s) 298
MseI TTAA 1 cut(s) 427
MspI CCGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 319
NcoI CCATGG 1 cut(s) 90
NdeII GATC 4 cut(s) 59, 128, 149, 188
NlaIII CATG 4 cut(s) 94, 283, 356, 365
NspV TTCGAA 1 cut(s) 102
PagI TCATGA 1 cut(s) 279
PfeI GAWTC 2 cut(s) 307, 358
PflFI GACNNNGTC 1 cut(s) 375
PkrI GCNGC 2 cut(s) 226, 324
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 387
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 4 cut(s) 59, 128, 149, 188
PsyI GACNNNGTC 1 cut(s) 375
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SacI GAGCTC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 2 cut(s) 225, 323
Sau3AI GATC 4 cut(s) 59, 128, 149, 188
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 298
SetI ASST 5 cut(s) 82, 123, 138, 247, 298
SfuI TTCGAA 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SsiI CCGC 1 cut(s) 224
SstI GAGCTC 1 cut(s) 298
StyI CCWWGG 2 cut(s) 90, 259
TaaI ACNGT 2 cut(s) 52, 405
TaqI TCGA 2 cut(s) 102, 305
TaqII GACCGA 1 cut(s) 192
TatI WGTACW 1 cut(s) 400
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 2 cut(s) 307, 358
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 2 cut(s) 223, 277
Tth111I GACNNNGTC 1 cut(s) 375
XmiI GTMKAC 2 cut(s) 76, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.