RLG00000035047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004876
Physical Location & Seq
Reverse (-)
59793612 .. 59794977
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035047

Sequence Viewer

Length: 645 bp
ATGGCCATTTCACAAAAATGGCCATTTCACAAAAATCCTTCTCTTTCTGTAGAAGAACATCTAGGCCATGCTTGCTCATATAGGAATGGGAGAAAAAAATTTTATTCCTCCATATTGGGGAATCCAAATACCAAGTCACCCCCCATTGCTCCCTCAAGTGGCTACGATCCCGGGGATCGTAACACCTCTACTTTATTACTTATTAGTTACAGATCTGAATCTCTAAGATTTACTCTCAGGTTTGTTCTCATGGTCATTCTCAGTTTTTGTTCTTCCTTTGCTCCTCAAAATGTCCAAACCGTGAACAAACCTCCTTCTTCTTGTCTACCTTGCCCTGCCATGGAAGAGTTCGTACTCCTCTGCAAACACCTCTTTAGATCTCAAGTGTCTTTGCTAAGATCTATTTTGGTTTGGTTGTTGTTATTCCTCTATGCGAGATCTTCTCGTAATCGGTCAACTGGAGAATGTATGGCGGCTTTGTCCGTATCCTCATCTCTGCAGACCACCCTTGGTTACCAATCCTCGCCCGCGATTTCCGTCAGAGCTCCGGTGACGAATATGCTATGGCGGCTGCAAGTTAGAGATGAAGAAGAAGCTTTGATTAGGGTTTGGGTTTTTTGGGCTACTTGGGCCTTTAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.24

Weight (kDa)

9.73

Isoelectric Point (pI)

72.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 325
AccII CGCG 1 cut(s) 530
AciI CCGC 3 cut(s) 473, 528, 568
AclWI GGATC 2 cut(s) 161, 183
AcoI YGGCCR 2 cut(s) 3, 20
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 3 cut(s) 117, 158, 340
AluBI AGCT 2 cut(s) 545, 596
AluI AGCT 2 cut(s) 545, 596
Alw21I GWGCWC 1 cut(s) 547
AlwI GGATC 2 cut(s) 161, 183
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 4 cut(s) 3, 20, 64, 630
ApeKI GCWGC 1 cut(s) 571
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspS9I GGNCC 1 cut(s) 630
AsuC2I CCSGG 2 cut(s) 171, 172
AsuHPI GGTGA 2 cut(s) 129, 562
AvaI CYCGRG 1 cut(s) 170
BalI TGGCCA 2 cut(s) 5, 22
BanII GRGCYC 1 cut(s) 547
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
Bbv12I GWGCWC 1 cut(s) 547
BbvI GCAGC 1 cut(s) 558
BciVI GTATCC 1 cut(s) 496
BcnI CCSGG 2 cut(s) 171, 172
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 2 cut(s) 48, 497
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 4 cut(s) 212, 377, 398, 437
BisI GCNGC 3 cut(s) 474, 569, 572
BlsI GCNGC 3 cut(s) 475, 570, 573
Bme1390I CCNGG 2 cut(s) 171, 172
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 630
BmrFI CCNGG 2 cut(s) 171, 172
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 139, 366
BpuMI CCSGG 2 cut(s) 171, 172
BsaBI GATNNNNATC 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 170, 171, 339, 508
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 158, 340
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 217
BseDI CCNNGG 4 cut(s) 170, 171, 339, 508
BseJI GATNNNNATC 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 117, 158, 340
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 250, 274
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 273, 347
BseXI GCAGC 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 4 cut(s) 5, 22, 66, 632
BsiHKAI GWGCWC 1 cut(s) 547
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 171, 548
BslI CCNNNNNNNGG 3 cut(s) 117, 158, 340
BsnI GGCC 4 cut(s) 5, 22, 66, 632
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 547
Bsp143I GATC 6 cut(s) 166, 175, 212, 377, 398, 437
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 3 cut(s) 473, 528, 568
BspANI GGCC 4 cut(s) 5, 22, 66, 632
BspCNI CTCAG 2 cut(s) 249, 273
BspFNI CGCG 1 cut(s) 530
BspMAI CTGCAG 1 cut(s) 501
BspPI GGATC 2 cut(s) 161, 183
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 4 cut(s) 170, 171, 339, 508
BssMI GATC 6 cut(s) 166, 175, 212, 377, 398, 437
BssT1I CCWWGG 2 cut(s) 339, 508
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 73, 528
BstDEI CTNAG 4 cut(s) 224, 236, 260, 395
BstDSI CCRYGG 1 cut(s) 339
BstEII GGTNACC 1 cut(s) 512
BstFNI CGCG 1 cut(s) 530
BstKTI GATC 6 cut(s) 169, 178, 215, 380, 401, 440
BstMBI GATC 6 cut(s) 166, 175, 212, 377, 398, 437
BstMWI GCNNNNNNNGC 3 cut(s) 72, 568, 629
BstPI GGTNACC 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 169, 170
BstSFI CTRYAG 2 cut(s) 48, 497
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 1 cut(s) 558
BstX2I RGATCY 4 cut(s) 212, 377, 398, 437
BstYI RGATCY 4 cut(s) 212, 377, 398, 437
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 4 cut(s) 5, 22, 66, 632
BtgI CCRYGG 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 73, 528
Cfr13I GGNCC 1 cut(s) 630
Cfr9I CCCGGG 1 cut(s) 170
Csp6I GTAC 1 cut(s) 353
CviAII CATG 3 cut(s) 68, 250, 340
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 4 cut(s) 224, 236, 260, 395
DpnI GATC 6 cut(s) 168, 177, 214, 379, 400, 439
DpnII GATC 6 cut(s) 166, 175, 212, 377, 398, 437
EaeI YGGCCR 2 cut(s) 3, 20
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 2 cut(s) 339, 508
Eco24I GRGCYC 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 170
Eco91I GGTNACC 1 cut(s) 512
EcoICRI GAGCTC 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 512
EcoT14I CCWWGG 2 cut(s) 339, 508
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 2 cut(s) 339, 508
FaeI CATG 3 cut(s) 71, 253, 343
FatI CATG 3 cut(s) 67, 249, 339
FauI CCCGC 1 cut(s) 535
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 3 cut(s) 474, 569, 572
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 3 cut(s) 474, 569, 572
FspBI CTAG 1 cut(s) 62
GluI GCNGC 3 cut(s) 474, 569, 572
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 4 cut(s) 5, 22, 66, 632
HapII CCGG 2 cut(s) 171, 548
Hin1II CATG 3 cut(s) 71, 253, 343
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 2 cut(s) 121, 218
HpaII CCGG 2 cut(s) 171, 548
HphI GGTGA 2 cut(s) 129, 562
Hpy166II GTNNAC 3 cut(s) 304, 326, 456
Hpy188I TCNGA 2 cut(s) 217, 542
Hpy8I GTNNAC 3 cut(s) 304, 326, 456
HpyAV CCTTC 2 cut(s) 48, 324
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 363, 499, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 568, 629
HpyF3I CTNAG 4 cut(s) 224, 236, 260, 395
Hsp92II CATG 3 cut(s) 71, 253, 343
Kzo9I GATC 6 cut(s) 166, 175, 212, 377, 398, 437
LmnI GCTCC 3 cut(s) 154, 286, 550
LpnPI CCDG 5 cut(s) 184, 223, 348, 444, 561
Lsp1109I GCAGC 1 cut(s) 558
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 5 cut(s) 135, 179, 206, 512, 550
MalI GATC 6 cut(s) 168, 177, 214, 379, 400, 439
MboI GATC 6 cut(s) 166, 175, 212, 377, 398, 437
MboII GAAGA 7 cut(s) 65, 264, 309, 356, 432, 599, 602
MflI RGATCY 4 cut(s) 212, 377, 398, 437
MhlI GDGCHC 1 cut(s) 547
MlsI TGGCCA 2 cut(s) 5, 22
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 2 cut(s) 5, 22
Mox20I TGGCCA 2 cut(s) 5, 22
MscI TGGCCA 2 cut(s) 5, 22
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 16
Msp20I TGGCCA 2 cut(s) 5, 22
MspI CCGG 2 cut(s) 171, 548
MspR9I CCNGG 2 cut(s) 171, 172
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 3 cut(s) 72, 568, 629
NciI CCSGG 2 cut(s) 171, 172
NcoI CCATGG 1 cut(s) 339
NdeII GATC 6 cut(s) 166, 175, 212, 377, 398, 437
NlaIII CATG 3 cut(s) 71, 253, 343
NmuCI GTSAC 2 cut(s) 135, 550
PfeI GAWTC 2 cut(s) 121, 218
PkrI GCNGC 3 cut(s) 475, 570, 573
Psp124BI GAGCTC 1 cut(s) 547
PspEI GGTNACC 1 cut(s) 512
PspPI GGNCC 1 cut(s) 630
PstI CTGCAG 1 cut(s) 501
PsuI RGATCY 4 cut(s) 212, 377, 398, 437
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 16
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 3 cut(s) 474, 569, 572
Sau3AI GATC 6 cut(s) 166, 175, 212, 377, 398, 437
Sau96I GGNCC 1 cut(s) 630
ScrFI CCNGG 2 cut(s) 171, 172
SduI GDGCHC 1 cut(s) 547
SetI ASST 7 cut(s) 188, 242, 313, 331, 372, 547, 598
SfcI CTRYAG 2 cut(s) 48, 497
SmaI CCCGGG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 2 cut(s) 154, 381
SmoI CTYRAG 2 cut(s) 154, 381
Sse9I AATT 1 cut(s) 98
SsiI CCGC 3 cut(s) 473, 528, 568
SspMI CTAG 1 cut(s) 62
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 169, 170
StyI CCWWGG 2 cut(s) 339, 508
TaaI ACNGT 1 cut(s) 301
TaqII GACCGA 1 cut(s) 441
TasI AATT 1 cut(s) 98
TauI GCSGC 2 cut(s) 476, 571
TfiI GAWTC 2 cut(s) 121, 218
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TseFI GTSAC 2 cut(s) 135, 550
TseI GCWGC 1 cut(s) 571
Tsp45I GTSAC 2 cut(s) 135, 550
TspDTI ATGAA 1 cut(s) 600
TspGWI ACGGA 2 cut(s) 472, 526
TspMI CCCGGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 98
XmaI CCCGGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.