RLG00000009058

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004876
Physical Location & Seq
Reverse (-)
45766461 .. 45775696
9236 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009058

Sequence Viewer

Length: 558 bp
ATGGTTTGGTTGTTGTTACTCTTTTATGCGAGATCTTCTCGTAATCGGTCAATTGGAGATTGTACGGAGGCTCTATCCTCCTCACCTCTGCCGACCACCCTTGGTTACCATCCCTTGCTCATGACTTCCATCGGAGCTCCGGAGTCGGATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGGATTGGAGATGGTGAAGGGAGATAGATCAGTTTCGGTTGTTTTGGGTGAACCAAGGTTTGGATCAAAAGCGAACATATGCACCCGGGGTGATGGTCCATGCAGCGAATCTTGCGACGTCAATTGTTGTAATTCGAACTGTCAAGCAAAATACCCTGCCATGGACTTGATGGTCATGGAACATGTGAGGGTGATGGTCCTTACCGTACTTGTCAGTGCACTTACAATTGCGCACTCCCCTACCTTCTTCCTCGTCAGGCATACACGCCTTTACTTGTCTCCTTCACCGCAGCAGAGTCGCAGACCCCTTATTCTTCCTCCCCTCGTCGCCTCTTTCCTCTCCGATTCTCCGATGGACGTCGCCGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.31

Weight (kDa)

5.68

Isoelectric Point (pI)

73.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AatII GACGTC 2 cut(s) 306, 546
Acc16I TGCGCA 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 245
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 1 cut(s) 473
AclWI GGATC 2 cut(s) 156, 256
AcoI YGGCCR 1 cut(s) 550
AcyI GRCGYC 2 cut(s) 303, 543
AfaI GTAC 2 cut(s) 64, 393
AfiI CCNNNNNNNGG 2 cut(s) 245, 346
AflIII ACRYGT 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 2 cut(s) 139, 406
Alw26I GTCTC 1 cut(s) 468
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 2 cut(s) 156, 256
Ama87I CYCGRG 1 cut(s) 270
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 550
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 3 cut(s) 163, 288, 475
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 281, 382
AsuC2I CCSGG 2 cut(s) 271, 272
AsuHPI GGTGA 6 cut(s) 75, 211, 245, 287, 388, 462
AsuII TTCGAA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 2 cut(s) 281, 382
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 2 cut(s) 139, 406
BbvI GCAGC 3 cut(s) 150, 300, 487
BccI CCATC 7 cut(s) 117, 137, 190, 272, 349, 373, 532
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BcnI CCSGG 2 cut(s) 271, 272
BcoDI GTCTC 1 cut(s) 468
BglII AGATCT 1 cut(s) 32
BisI GCNGC 3 cut(s) 164, 289, 476
BlsI GCNGC 3 cut(s) 165, 290, 477
Bme1390I CCNGG 2 cut(s) 271, 272
Bme18I GGWCC 2 cut(s) 281, 382
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 281, 382
BmrFI CCNGG 2 cut(s) 271, 272
BplI GAGNNNNNCTC 2 cut(s) 22, 54
Bpu14I TTCGAA 1 cut(s) 320
BpuMI CCSGG 2 cut(s) 271, 272
BsaHI GRCGYC 2 cut(s) 303, 543
BsaJI CCNNGG 5 cut(s) 100, 239, 270, 271, 345
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 346
Bse118I RCCGGY 1 cut(s) 548
BseAI TCCGGA 1 cut(s) 139
BseDI CCNNGG 5 cut(s) 100, 239, 270, 271, 345
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 245, 346
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 150, 300, 487
BshFI GGCC 1 cut(s) 552
BsiHKAI GWGCWC 2 cut(s) 139, 406
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 3 cut(s) 140, 271, 549
BslI CCNNNNNNNGG 2 cut(s) 245, 346
BsmAI GTCTC 1 cut(s) 468
BsnI GGCC 1 cut(s) 552
BsoBI CYCGRG 1 cut(s) 270
Bsp119I TTCGAA 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 139, 406
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 4 cut(s) 32, 148, 212, 248
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 1 cut(s) 473
BspANI GGCC 1 cut(s) 552
BspEI TCCGGA 1 cut(s) 139
BspHI TCATGA 1 cut(s) 120
BspPI GGATC 2 cut(s) 156, 256
BspT104I TTCGAA 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 5 cut(s) 100, 239, 270, 271, 345
BssMI GATC 4 cut(s) 32, 148, 212, 248
BssNI GRCGYC 2 cut(s) 303, 543
BssT1I CCWWGG 3 cut(s) 100, 239, 345
Bst4CI ACNGT 2 cut(s) 326, 391
BstACI GRCGYC 2 cut(s) 303, 543
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 550
BstDSI CCRYGG 1 cut(s) 345
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 4 cut(s) 35, 151, 215, 251
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 4 cut(s) 32, 148, 212, 248
BstMWI GCNNNNNNNGC 2 cut(s) 160, 297
BstNSI RCATGY 1 cut(s) 371
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 269, 270
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 150, 300, 487
BstX2I RGATCY 2 cut(s) 32, 148
BstYI RGATCY 2 cut(s) 32, 148
BsuRI GGCC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 550
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 548
Cfr13I GGNCC 2 cut(s) 281, 382
Cfr9I CCCGGG 1 cut(s) 270
Csp6I GTAC 2 cut(s) 63, 392
CviAII CATG 5 cut(s) 121, 285, 346, 361, 368
CviJI RGCY 4 cut(s) 71, 137, 163, 552
CviKI_1 RGCY 4 cut(s) 71, 137, 163, 552
CviQI GTAC 2 cut(s) 63, 392
DpnI GATC 4 cut(s) 34, 150, 214, 250
DpnII GATC 4 cut(s) 32, 148, 212, 248
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 550
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 3 cut(s) 100, 239, 345
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 281, 382
Eco53kI GAGCTC 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 270
Eco91I GGTNACC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 104
EcoT14I CCWWGG 3 cut(s) 100, 239, 345
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 3 cut(s) 100, 239, 345
FaeI CATG 5 cut(s) 124, 288, 349, 364, 371
FatI CATG 5 cut(s) 120, 284, 345, 360, 367
FauNDI CATATG 1 cut(s) 263
Fnu4HI GCNGC 3 cut(s) 164, 289, 476
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 164, 289, 476
FspI TGCGCA 1 cut(s) 417
GlaI GCGC 1 cut(s) 417
GluI GCNGC 3 cut(s) 164, 289, 476
HaeIII GGCC 1 cut(s) 552
HapII CCGG 3 cut(s) 140, 271, 549
HhaI GCGC 1 cut(s) 418
Hin1I GRCGYC 2 cut(s) 303, 543
Hin1II CATG 5 cut(s) 124, 288, 349, 364, 371
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 4 cut(s) 143, 293, 481, 530
HpaII CCGG 3 cut(s) 140, 271, 549
HphI GGTGA 6 cut(s) 75, 211, 245, 287, 388, 462
Hpy166II GTNNAC 2 cut(s) 236, 404
Hpy188I TCNGA 4 cut(s) 134, 148, 529, 537
Hpy188III TCNNGA 2 cut(s) 121, 140
Hpy8I GTNNAC 2 cut(s) 236, 404
Hpy99I CGWCG 3 cut(s) 305, 515, 548
HpyAV CCTTC 4 cut(s) 179, 196, 439, 477
HpyCH4III ACNGT 2 cut(s) 326, 391
HpyCH4IV ACGT 2 cut(s) 303, 543
HpyCH4V TGCA 4 cut(s) 166, 267, 288, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 297
HpySE526I ACGT 2 cut(s) 303, 543
Hsp92I GRCGYC 2 cut(s) 303, 543
Hsp92II CATG 5 cut(s) 124, 288, 349, 364, 371
HspAI GCGC 1 cut(s) 416
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 548
KroNI GCCGGC 1 cut(s) 550
Kzo9I GATC 4 cut(s) 32, 148, 212, 248
LmnI GCTCC 2 cut(s) 134, 142
LpnPI CCDG 4 cut(s) 153, 284, 354, 427
Lsp1109I GCAGC 3 cut(s) 150, 300, 487
MaeII ACGT 2 cut(s) 303, 543
MaeIII GTNAC 2 cut(s) 15, 104
MalI GATC 4 cut(s) 34, 150, 214, 250
MboI GATC 4 cut(s) 32, 148, 212, 248
MboII GAAGA 5 cut(s) 27, 191, 194, 424, 491
MfeI CAATTG 3 cut(s) 51, 307, 411
MflI RGATCY 2 cut(s) 32, 148
MhlI GDGCHC 2 cut(s) 139, 406
MluCI AATT 4 cut(s) 51, 307, 316, 411
MlyI GAGTC 2 cut(s) 152, 490
MmeI TCCRAC 2 cut(s) 126, 151
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 548
MseI TTAA 1 cut(s) 556
MspI CCGG 3 cut(s) 140, 271, 549
MspR9I CCNGG 2 cut(s) 271, 272
MunI CAATTG 3 cut(s) 51, 307, 411
MwoI GCNNNNNNNGC 2 cut(s) 160, 297
NaeI GCCGGC 1 cut(s) 550
NciI CCSGG 2 cut(s) 271, 272
NcoI CCATGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 263
NdeII GATC 4 cut(s) 32, 148, 212, 248
NgoMIV GCCGGC 1 cut(s) 548
NlaIII CATG 5 cut(s) 124, 288, 349, 364, 371
NsbI TGCGCA 1 cut(s) 417
NspI RCATGY 1 cut(s) 371
NspV TTCGAA 1 cut(s) 320
PagI TCATGA 1 cut(s) 120
PciI ACATGT 1 cut(s) 367
PdiI GCCGGC 1 cut(s) 550
PfeI GAWTC 2 cut(s) 293, 530
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 3 cut(s) 165, 290, 477
PleI GAGTC 2 cut(s) 151, 489
PpsI GAGTC 2 cut(s) 151, 489
PscI ACATGT 1 cut(s) 367
Psp124BI GAGCTC 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 104
PspPI GGNCC 2 cut(s) 281, 382
PsuI RGATCY 2 cut(s) 32, 148
RsaI GTAC 2 cut(s) 64, 393
RsaNI GTAC 2 cut(s) 63, 392
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 556
SatI GCNGC 3 cut(s) 164, 289, 476
Sau3AI GATC 4 cut(s) 32, 148, 212, 248
Sau96I GGNCC 2 cut(s) 281, 382
SchI GAGTC 2 cut(s) 152, 490
ScrFI CCNGG 2 cut(s) 271, 272
SduI GDGCHC 2 cut(s) 139, 406
SetI ASST 6 cut(s) 88, 139, 245, 306, 431, 546
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 2 cut(s) 281, 382
SmaI CCCGGG 1 cut(s) 272
Sse9I AATT 4 cut(s) 51, 307, 316, 411
SsiI CCGC 1 cut(s) 473
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 269, 270
StyI CCWWGG 3 cut(s) 100, 239, 345
TaaI ACNGT 2 cut(s) 326, 391
TaiI ACGT 2 cut(s) 306, 546
TaqI TCGA 1 cut(s) 320
TaqII GACCGA 1 cut(s) 36
TasI AATT 4 cut(s) 51, 307, 316, 411
TfiI GAWTC 2 cut(s) 293, 530
Tru1I TTAA 1 cut(s) 556
Tru9I TTAA 1 cut(s) 556
TscAI CASTG 1 cut(s) 406
TseI GCWGC 3 cut(s) 163, 288, 475
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 80
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 281, 382
XceI RCATGY 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XmaI CCCGGG 1 cut(s) 270
ZraI GACGTC 2 cut(s) 304, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.