Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Forward (+)

65671860 .. 65672721

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTCATTCTCAGTTTTTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACCGTGAACAGATCTCCTTCTTCTTGTCTACCTTGCTCTGCCATGGAAGAGTTCCACCTCCTCTGCAACCACCTCTTCAGATCTCAGCTCTCTTTGCTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTAATCGGTCCATTGGAGAATGTACGGAGGTTCTGCCCTCCTCACCTCTGCCGACCACCCTTGGTTACCATCCCTTGCTCATGACTTCCGTTGGAGCTCCGGAGTCGAATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGCTTTGATTAAGATTTGGGTTTTTTGGGCTGCTTTGGCCTTTTTGTTTTCGGCTATGACCATGTGGATCATGGTTTGCAGACTTCATCTGTATTGGGCTGTGTCCCTTGTACTGTTGTTTGGCTTAGAGCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.03

Weight (kDa)

5.73

Isoelectric Point (pI)

70.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	295
AclWI	GGATC	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	2 cut(s)	220, 453
AluBI	AGCT	3 cut(s)	136, 293, 344
AluI	AGCT	3 cut(s)	136, 293, 344
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	319, 371
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	306, 358
BccI	CCATC	1 cut(s)	273
BglII	AGATCT	4 cut(s)	59, 128, 149, 188
BisI	GCNGC	2 cut(s)	320, 372
BlsI	GCNGC	2 cut(s)	321, 373
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpuEI	CTTGAG	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	90, 256
BsaWI	WCCGGW	1 cut(s)	295
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	90, 256
BseGI	GGATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	25, 146
BseRI	GAGGAG	3 cut(s)	24, 98, 226
BseXI	GCAGC	2 cut(s)	306, 358
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	59, 128, 149, 188, 408
Bsp19I	CCATGG	1 cut(s)	90
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	24, 145
BspEI	TCCGGA	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	276
BspPI	GGATC	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	90, 256
BssMI	GATC	5 cut(s)	59, 128, 149, 188, 408
BssT1I	CCWWGG	2 cut(s)	90, 256
Bst4CI	ACNGT	2 cut(s)	52, 456
Bst6I	CTCTTC	2 cut(s)	90, 128
BstDEI	CTNAG	4 cut(s)	11, 132, 146, 466
BstDSI	CCRYGG	1 cut(s)	90
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	5 cut(s)	62, 131, 152, 191, 411
BstMBI	GATC	5 cut(s)	59, 128, 149, 188, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 316, 377
BstPI	GGTNACC	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	306, 358
BstX2I	RGATCY	4 cut(s)	59, 128, 149, 188
BstYI	RGATCY	4 cut(s)	59, 128, 149, 188
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	219, 452
CviAII	CATG	4 cut(s)	91, 277, 403, 412
CviQI	GTAC	2 cut(s)	219, 452
DdeI	CTNAG	4 cut(s)	11, 132, 146, 466
DpnI	GATC	5 cut(s)	61, 130, 151, 190, 410
DpnII	GATC	5 cut(s)	59, 128, 149, 188, 408
Eam1104I	CTCTTC	2 cut(s)	90, 128
EarI	CTCTTC	2 cut(s)	90, 128
Ecl136II	GAGCTC	1 cut(s)	293
Eco130I	CCWWGG	2 cut(s)	90, 256
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	90, 256
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	2 cut(s)	90, 256
FaeI	CATG	4 cut(s)	94, 280, 406, 415
FaiI	YATR	7 cut(s)	92, 183, 278, 313, 398, 404, 413
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	4 cut(s)	90, 276, 402, 411
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	320, 372
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	320, 372
GluI	GCNGC	2 cut(s)	320, 372
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	4 cut(s)	94, 280, 406, 415
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	2 cut(s)	299, 304
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	2 cut(s)	55, 77
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	3 cut(s)	38, 277, 296
Hpy8I	GTNNAC	2 cut(s)	55, 77
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	52, 456
HpyCH4V	TGCA	3 cut(s)	114, 322, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 316, 377
HpyF3I	CTNAG	4 cut(s)	11, 132, 146, 466
Hsp92II	CATG	4 cut(s)	94, 280, 406, 415
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	59, 128, 149, 188, 408
LmnI	GCTCC	3 cut(s)	37, 290, 298
LpnPI	CCDG	1 cut(s)	309
Lsp1109I	GCAGC	2 cut(s)	306, 358
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	5 cut(s)	61, 130, 151, 190, 410
MboI	GATC	5 cut(s)	59, 128, 149, 188, 408
MboII	GAAGA	6 cut(s)	60, 107, 115, 183, 347, 350
MflI	RGATCY	4 cut(s)	59, 128, 149, 188
MhlI	GDGCHC	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	268, 307
MnlI	CCTC	8 cut(s)	45, 116, 119, 131, 217, 244, 247, 252
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	2 cut(s)	351, 478
MspI	CCGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	142, 316, 377
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	5 cut(s)	59, 128, 149, 188, 408
NlaIII	CATG	4 cut(s)	94, 280, 406, 415
PagI	TCATGA	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	321, 373
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	4 cut(s)	59, 128, 149, 188
RsaI	GTAC	2 cut(s)	220, 453
RsaNI	GTAC	2 cut(s)	219, 452
SacI	GAGCTC	1 cut(s)	295
SaqAI	TTAA	2 cut(s)	351, 478
SatI	GCNGC	2 cut(s)	320, 372
Sau3AI	GATC	5 cut(s)	59, 128, 149, 188, 408
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	8 cut(s)	82, 108, 123, 138, 228, 244, 295, 346
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
SstI	GAGCTC	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	90, 256
TaaI	ACNGT	2 cut(s)	52, 456
TaqI	TCGA	1 cut(s)	302
TaqII	GACCGA	1 cut(s)	192
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	351, 478
Tru9I	TTAA	2 cut(s)	351, 478
TseI	GCWGC	2 cut(s)	319, 371
TspDTI	ATGAA	2 cut(s)	348, 416
TspGWI	ACGGA	2 cut(s)	236, 274
VpaK11BI	GGWCC	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.