RchiOBHm_Chr4g0409181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004876
Physical Location & Seq
Reverse (-)
32410378 .. 32410650
273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38023

Sequence Viewer

Length: 273 bp
ATGGAAGAGTTCGAACTCCCCTGCAACCACCTCTTCAGATCTCAGGTTTCTTTGCTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTAATCGGTCAACTGGAGAATGTATGGCGGCTCTGTCCGTATCCTCACCTCTGCCGACCACCCTTGGTTACCAGCCCTTGCTCATGACTTCCGTCAGAGCTCCGGAGTCGAATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGCTTTGATTAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.27

Weight (kDa)

5.25

Isoelectric Point (pI)

90.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 19
AluBI AGCT 2 cut(s) 206, 257
AluI AGCT 2 cut(s) 206, 257
Alw21I GWGCWC 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 144
AsuII TTCGAA 1 cut(s) 12
BanII GRGCYC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 219
BciVI GTATCC 1 cut(s) 157
BfuI GTATCC 1 cut(s) 157
BglII AGATCT 3 cut(s) 38, 59, 98
BisI GCNGC 2 cut(s) 135, 233
BlsI GCNGC 2 cut(s) 136, 234
BoxI GACNNNNGTC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpmI CTGGAG 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 208
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 3 cut(s) 38, 59, 98
BspACI CCGC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 55
BspEI TCCGGA 1 cut(s) 208
BspHI TCATGA 1 cut(s) 189
BspT104I TTCGAA 1 cut(s) 12
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 38, 59, 98
BssT1I CCWWGG 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 42, 56
BstEII GGTNACC 1 cut(s) 173
BstKTI GATC 3 cut(s) 41, 62, 101
BstMBI GATC 3 cut(s) 38, 59, 98
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstPAI GACNNNNGTC 1 cut(s) 197
BstPI GGTNACC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 38, 59, 98
BstYI RGATCY 3 cut(s) 38, 59, 98
BsuI GTATCC 1 cut(s) 157
CciI TCATGA 1 cut(s) 189
CviAII CATG 1 cut(s) 190
CviJI RGCY 5 cut(s) 137, 181, 206, 232, 257
CviKI_1 RGCY 5 cut(s) 137, 181, 206, 232, 257
DdeI CTNAG 2 cut(s) 42, 56
DpnI GATC 3 cut(s) 40, 61, 100
DpnII GATC 3 cut(s) 38, 59, 98
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 19
Eco91I GGTNACC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 93, 131, 191, 226
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 135, 233
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 135, 233
GluI GCNGC 2 cut(s) 135, 233
GsuI CTGGAG 1 cut(s) 141
HapII CCGG 1 cut(s) 209
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 212, 217
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 38, 203
Hpy188III TCNNGA 2 cut(s) 190, 209
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 24, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 42, 56
Hsp92II CATG 1 cut(s) 193
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 38, 59, 98
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 29, 34, 105, 191, 222
Lsp1109I GCAGC 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 173
MalI GATC 3 cut(s) 40, 61, 100
MboI GATC 3 cut(s) 38, 59, 98
MboII GAAGA 5 cut(s) 17, 25, 93, 260, 263
MflI RGATCY 3 cut(s) 38, 59, 98
MhlI GDGCHC 1 cut(s) 208
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 41, 160, 165
MroI TCCGGA 1 cut(s) 208
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 3 cut(s) 38, 59, 98
NlaIII CATG 1 cut(s) 193
NspV TTCGAA 1 cut(s) 12
PagI TCATGA 1 cut(s) 189
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 136, 234
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 208
PspEI GGTNACC 1 cut(s) 173
PsuI RGATCY 3 cut(s) 38, 59, 98
SacI GAGCTC 1 cut(s) 208
SatI GCNGC 2 cut(s) 135, 233
Sau3AI GATC 3 cut(s) 38, 59, 98
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 208
SetI ASST 5 cut(s) 33, 48, 157, 208, 259
SfuI TTCGAA 1 cut(s) 12
SsiI CCGC 1 cut(s) 134
SstI GAGCTC 1 cut(s) 208
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 2 cut(s) 12, 215
TaqII GACCGA 1 cut(s) 102
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 217
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 2 cut(s) 133, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.