RLG00000036320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004876
Physical Location & Seq
Forward (+)
79148612 .. 79149244
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036320

Sequence Viewer

Length: 507 bp
ATGGCTATGGTTGATGTCGTGGTCGACGTCTTGGTGGCTGGAATATCCGTTGATCGTCCACTCTGGTTGGGAGCTAGGGCCCGAAAACTGGATCTGAGTTCGGGTCAAAGCTTCACGGGGGATCCGATGGCGGTTTGTTCTGTTGGGTTTCCATCAGATGCTGTTGTTGGACTGCGAAGGGGGCCGATCAAGGATAACGACGCTTATAGTGGAAGGGCTGCCGGTGGTTGTGCAGGTTCGGGACCGGCCTCGCGTAGAGGAACTGTTGCATACACGGCGGAGTCCGTCTCCCTGGTGTCGGGCCTAGGATTGGGATCGTTTCTTGAGCACTGGATCGAGATTGGCTCTGGATGTCGGGTTCGGGTCCAGGAGTGGCTTTTGTCCCTGCCGGTTGGTGGTGGAAGGGTGCCCATAGTAGATGCCAAGCATAGGGCTCTTTGGGCCTTACTTTGGGCTCCAGAGTTGTTGGACCTGAGATGGCTTTTTGCTCAAGGTTGGGGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.72

Weight (kDa)

7.69

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 406
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 253
AciI CCGC 2 cut(s) 131, 278
AclWI GGATC 5 cut(s) 99, 116, 129, 322, 341
AcyI GRCGYC 1 cut(s) 27
AfiI CCNNNNNNNGG 6 cut(s) 88, 298, 310, 395, 429, 450
AjnI CCWGG 2 cut(s) 291, 366
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 2 cut(s) 74, 111
AluI AGCT 2 cut(s) 74, 111
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 5 cut(s) 99, 116, 129, 322, 341
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 5 cut(s) 78, 182, 246, 301, 441
ApaI GGGCCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 304
AspS9I GGNCC 8 cut(s) 78, 79, 182, 242, 301, 364, 441, 469
AvaII GGWCC 3 cut(s) 242, 364, 469
AvrII CCTAGG 1 cut(s) 304
BaeGI GKGCMC 2 cut(s) 82, 411
BamHI GGATCC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 3 cut(s) 82, 436, 457
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 205
BccI CCATC 3 cut(s) 121, 160, 471
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 2 cut(s) 293, 368
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 75, 305
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 219
BlnI CCTAGG 1 cut(s) 304
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 293, 368
Bme18I GGWCC 3 cut(s) 242, 364, 469
BmgT120I GGNCC 8 cut(s) 78, 79, 182, 242, 301, 364, 441, 469
BmiI GGNNCC 7 cut(s) 80, 123, 183, 243, 365, 408, 456
BmrFI CCNGG 2 cut(s) 293, 368
BmsI GCATC 2 cut(s) 148, 409
BplI GAGNNNNNCTC 4 cut(s) 272, 304, 329, 361
BpmI CTGGAG 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 344, 474
BsaBI GATNNNNATC 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 291, 304
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 298, 310, 395, 429, 450
Bse118I RCCGGY 3 cut(s) 221, 244, 388
Bse1I ACTGG 2 cut(s) 93, 335
Bse8I GATNNNNATC 1 cut(s) 313
BseBI CCWGG 2 cut(s) 293, 368
BseDI CCNNGG 2 cut(s) 291, 304
BseGI GGATG 1 cut(s) 356
BseJI GATNNNNATC 1 cut(s) 313
BseLI CCNNNNNNNGG 6 cut(s) 88, 298, 310, 395, 429, 450
BseMII CTCAG 2 cut(s) 86, 464
BseNI ACTGG 2 cut(s) 93, 335
BseSI GKGCMC 2 cut(s) 82, 411
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 5 cut(s) 80, 184, 248, 303, 443
BshNI GGYRCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 3 cut(s) 222, 245, 389
BslFI GGGAC 2 cut(s) 255, 367
BslI CCNNNNNNNGG 6 cut(s) 88, 298, 310, 395, 429, 450
BsmAI GTCTC 1 cut(s) 292
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 255, 367
BsnI GGCC 5 cut(s) 80, 184, 248, 303, 443
Bsp120I GGGCCC 1 cut(s) 78
Bsp1286I GDGCHC 5 cut(s) 82, 330, 411, 436, 457
Bsp143I GATC 6 cut(s) 52, 91, 121, 186, 314, 333
BspACI CCGC 2 cut(s) 131, 278
BspANI GGCC 5 cut(s) 80, 184, 248, 303, 443
BspCNI CTCAG 2 cut(s) 87, 465
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 7 cut(s) 80, 123, 183, 243, 365, 408, 456
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 5 cut(s) 99, 116, 129, 322, 341
BspT107I GGYRCC 1 cut(s) 406
BsrFI RCCGGY 3 cut(s) 221, 244, 388
BsrI ACTGG 2 cut(s) 93, 335
BssAI RCCGGY 3 cut(s) 221, 244, 388
BssECI CCNNGG 2 cut(s) 291, 304
BssMI GATC 6 cut(s) 52, 91, 121, 186, 314, 333
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 2 cut(s) 293, 368
Bst4CI ACNGT 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 95, 473
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 253
BstKTI GATC 6 cut(s) 55, 94, 124, 189, 317, 336
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 6 cut(s) 52, 91, 121, 186, 314, 333
BstMWI GCNNNNNNNGC 3 cut(s) 181, 275, 440
BstNI CCWGG 2 cut(s) 293, 368
BstSCI CCNGG 2 cut(s) 291, 366
BstSLI GKGCMC 2 cut(s) 82, 411
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 2 cut(s) 91, 121
BstYI RGATCY 2 cut(s) 91, 121
BsuRI GGCC 5 cut(s) 80, 184, 248, 303, 443
BtsCI GGATG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 161
Cfr10I RCCGGY 3 cut(s) 221, 244, 388
Cfr13I GGNCC 8 cut(s) 78, 79, 182, 242, 301, 364, 441, 469
CseI GACGC 1 cut(s) 209
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
DdeI CTNAG 2 cut(s) 95, 473
DpnI GATC 6 cut(s) 54, 93, 123, 188, 316, 335
DpnII GATC 6 cut(s) 52, 91, 121, 186, 314, 333
EciI GGCGGA 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 3 cut(s) 82, 436, 457
Eco47I GGWCC 3 cut(s) 242, 364, 469
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 291, 366
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 3 cut(s) 82, 436, 457
ErhI CCWWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 292
FaiI YATR 5 cut(s) 8, 207, 271, 413, 429
FaqI GGGAC 2 cut(s) 255, 367
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 363
FriOI GRGCYC 3 cut(s) 82, 436, 457
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 75, 305
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 5 cut(s) 80, 184, 248, 303, 443
HapII CCGG 3 cut(s) 222, 245, 389
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 1 cut(s) 281
HpaII CCGG 3 cut(s) 222, 245, 389
Hpy166II GTNNAC 2 cut(s) 25, 59
Hpy188I TCNGA 3 cut(s) 96, 126, 157
Hpy188III TCNNGA 5 cut(s) 240, 323, 337, 348, 458
Hpy8I GTNNAC 2 cut(s) 25, 59
Hpy99I CGWCG 2 cut(s) 29, 203
HpyAV CCTTC 3 cut(s) 171, 207, 396
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 233, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 275, 440
HpyF3I CTNAG 2 cut(s) 95, 473
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
Kzo9I GATC 6 cut(s) 52, 91, 121, 186, 314, 333
LmnI GCTCC 2 cut(s) 71, 460
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 2 cut(s) 148, 409
MaeI CTAG 2 cut(s) 75, 305
MaeII ACGT 1 cut(s) 27
MalI GATC 6 cut(s) 54, 93, 123, 188, 316, 335
MboI GATC 6 cut(s) 52, 91, 121, 186, 314, 333
MflI RGATCY 2 cut(s) 91, 121
MhlI GDGCHC 5 cut(s) 82, 330, 411, 436, 457
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 2 cut(s) 148, 447
MnlI CCTC 2 cut(s) 251, 259
MspI CCGG 3 cut(s) 222, 245, 389
MspR9I CCNGG 2 cut(s) 293, 368
MvaI CCWGG 2 cut(s) 293, 368
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 181, 275, 440
NdeII GATC 6 cut(s) 52, 91, 121, 186, 314, 333
NlaIV GGNNCC 7 cut(s) 80, 123, 183, 243, 365, 408, 456
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 122
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 291, 366
PspGI CCWGG 2 cut(s) 291, 366
PspN4I GGNNCC 7 cut(s) 80, 123, 183, 243, 365, 408, 456
PspOMI GGGCCC 1 cut(s) 78
PspPI GGNCC 8 cut(s) 78, 79, 182, 242, 301, 364, 441, 469
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 91, 121
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 6 cut(s) 52, 91, 121, 186, 314, 333
Sau96I GGNCC 8 cut(s) 78, 79, 182, 242, 301, 364, 441, 469
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 293, 368
SduI GDGCHC 5 cut(s) 82, 330, 411, 436, 457
SetI ASST 6 cut(s) 30, 76, 113, 238, 474, 496
SfaNI GCATC 2 cut(s) 148, 409
SinI GGWCC 3 cut(s) 242, 364, 469
SmlI CTYRAG 2 cut(s) 323, 489
SmoI CTYRAG 2 cut(s) 323, 489
SsiI CCGC 2 cut(s) 131, 278
SspMI CTAG 2 cut(s) 75, 305
StyD4I CCNGG 2 cut(s) 291, 366
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 24, 336
TscAI CASTG 1 cut(s) 335
TseI GCWGC 1 cut(s) 218
TspGWI ACGGA 2 cut(s) 37, 274
TspRI CASTG 1 cut(s) 335
VpaK11BI GGWCC 3 cut(s) 242, 364, 469
XmaJI CCTAGG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 2 cut(s) 75, 305
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.