RLG00000013220

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
27903330 .. 27903647
318 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013220

Sequence Viewer

Length: 318 bp
ATGGTCATTCTCAGTTCTTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACTATGAACAAATCTCCTTCTTCTTGTCTACCTTGCCCTGCCATGGAAGAGTTCGTACTCCTTTACAACCACCTCTTCAGATCTCAGGTTTCTTTGCTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGTGAGATCTTCTCGTAATCGGTTAACTGGAGAATGTATGGTGGCTCTGTCCGTATCTTCACCTCTGCAGACCACCCTTGGTTACCAATCCTCGCTCATGACTTCCGTCGAAGCTCCAGAGTCGAATCTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.62

Weight (kDa)

6.53

Isoelectric Point (pI)

96.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BfmI CTRYAG 1 cut(s) 248
BglII AGATCT 3 cut(s) 128, 149, 188
BoxI GACNNNNGTC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 2 cut(s) 231, 282
BpuEI CTTGAG 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 90, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 90, 259
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 25, 146
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 91
Bsp143I GATC 3 cut(s) 128, 149, 188
Bsp19I CCATGG 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 24, 145
BspHI TCATGA 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 90, 259
BssMI GATC 3 cut(s) 128, 149, 188
BssT1I CCWWGG 2 cut(s) 90, 259
Bst6I CTCTTC 2 cut(s) 90, 128
BstDEI CTNAG 3 cut(s) 11, 132, 146
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 263
BstKTI GATC 3 cut(s) 131, 152, 191
BstMBI GATC 3 cut(s) 128, 149, 188
BstPAI GACNNNNGTC 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 248
BstX2I RGATCY 3 cut(s) 128, 149, 188
BstYI RGATCY 3 cut(s) 128, 149, 188
BtgI CCRYGG 1 cut(s) 90
CciI TCATGA 1 cut(s) 279
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 91, 280
CviJI RGCY 2 cut(s) 227, 296
CviKI_1 RGCY 2 cut(s) 227, 296
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 3 cut(s) 11, 132, 146
DpnI GATC 3 cut(s) 130, 151, 190
DpnII GATC 3 cut(s) 128, 149, 188
Eam1104I CTCTTC 2 cut(s) 90, 128
EarI CTCTTC 2 cut(s) 90, 128
Eco130I CCWWGG 2 cut(s) 90, 259
Eco57I CTGAAG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 90, 259
ErhI CCWWGG 2 cut(s) 90, 259
FaeI CATG 2 cut(s) 94, 283
FaiI YATR 6 cut(s) 53, 92, 183, 221, 281, 316
FatI CATG 2 cut(s) 90, 279
FblI GTMKAC 1 cut(s) 76
GsuI CTGGAG 2 cut(s) 231, 282
Hin1II CATG 2 cut(s) 94, 283
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 302, 307
HpaI GTTAAC 1 cut(s) 207
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 77, 207
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 38, 280, 299
Hpy8I GTNNAC 2 cut(s) 77, 207
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 250
HpyF3I CTNAG 3 cut(s) 11, 132, 146
Hsp92II CATG 2 cut(s) 94, 283
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 128, 149, 188
LmnI GCTCC 2 cut(s) 37, 301
LpnPI CCDG 4 cut(s) 99, 119, 195, 312
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 130, 151, 190
MboI GATC 3 cut(s) 128, 149, 188
MboII GAAGA 5 cut(s) 60, 107, 115, 183, 231
MflI RGATCY 3 cut(s) 128, 149, 188
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 4 cut(s) 45, 131, 255, 283
MseI TTAA 1 cut(s) 206
NcoI CCATGG 1 cut(s) 90
NdeII GATC 3 cut(s) 128, 149, 188
NlaIII CATG 2 cut(s) 94, 283
PagI TCATGA 1 cut(s) 279
PfeI GAWTC 1 cut(s) 307
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 287
PspEI GGTNACC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 3 cut(s) 128, 149, 188
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 206
Sau3AI GATC 3 cut(s) 128, 149, 188
SchI GAGTC 1 cut(s) 311
SetI ASST 5 cut(s) 82, 123, 138, 247, 298
SfcI CTRYAG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
StyI CCWWGG 2 cut(s) 90, 259
TaqI TCGA 2 cut(s) 291, 305
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 2 cut(s) 223, 277
XmiI GTMKAC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.