Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Reverse (-)

24144023 .. 24144986

Gene Structure 964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTCATTCTCAGTTTTTGTTCTCCCTTTGCTCCTCAAGATTCCCAAACCGTGAACAAATCTCCTTCTTCTTGTCTACCTTGTCCTGTCATGGAAGATTTCGTACACCTCTGCAACCACCTCTTCAGATCTCAGTTTTCTTTGCTAAGATCTATTGTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTTTCGTAATCGGTCAACTGGAGAATGTATGGCAGCTCTGTCCGTATCCTCACCTCTGCAGACCACCCTTGGTTACCAATCCTTGCTCGCGATTTCCGTCGGAGCTCCGGTGACGAATCTGCTATGGCGGCTGCAAAGTGGAGAGGAAGAAGAAGCTTTGATTAGGGCTTGGGTTTTGTTGGGCTGCTTGGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.3

Weight (kDa)

6.69

Isoelectric Point (pI)

93.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	1 cut(s)	281
AciI	CCGC	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	105
AluBI	AGCT	3 cut(s)	227, 296, 347
AluI	AGCT	3 cut(s)	227, 296, 347
Alw21I	GWGCWC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	224, 322, 375
AsuHPI	GGTGA	2 cut(s)	234, 313
BanII	GRGCYC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	87, 119
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	236, 309, 362
BciVI	GTATCC	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	247
BglII	AGATCT	3 cut(s)	128, 149, 188
BisI	GCNGC	4 cut(s)	225, 320, 323, 376
BlsI	GCNGC	4 cut(s)	226, 321, 324, 377
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	25, 146
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	236, 309, 362
Bsh1236I	CGCG	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	128, 149, 188
Bsp68I	TCGCGA	1 cut(s)	281
BspACI	CCGC	1 cut(s)	319
BspCNI	CTCAG	2 cut(s)	24, 145
BspFNI	CGCG	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	128, 149, 188
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	11, 132, 146
BstEII	GGTNACC	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	3 cut(s)	131, 152, 191
BstMBI	GATC	3 cut(s)	128, 149, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 381
BstPI	GGTNACC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	3 cut(s)	236, 309, 362
BstX2I	RGATCY	3 cut(s)	128, 149, 188
BstYI	RGATCY	3 cut(s)	128, 149, 188
BsuI	GTATCC	1 cut(s)	247
BtuMI	TCGCGA	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	7 cut(s)	227, 296, 322, 347, 359, 375, 384
CviKI_1	RGCY	7 cut(s)	227, 296, 322, 347, 359, 375, 384
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	3 cut(s)	11, 132, 146
DpnI	GATC	3 cut(s)	130, 151, 190
DpnII	GATC	3 cut(s)	128, 149, 188
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	94
FaiI	YATR	4 cut(s)	92, 183, 221, 316
FatI	CATG	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	225, 320, 323, 376
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	225, 320, 323, 376
GluI	GCNGC	4 cut(s)	225, 320, 323, 376
GsuI	CTGGAG	1 cut(s)	231
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	2 cut(s)	41, 307
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	2 cut(s)	234, 313
Hpy166II	GTNNAC	4 cut(s)	55, 77, 106, 207
Hpy188I	TCNGA	2 cut(s)	128, 293
Hpy188III	TCNNGA	2 cut(s)	38, 280
Hpy8I	GTNNAC	4 cut(s)	55, 77, 106, 207
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	114, 250, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 381
HpyF3I	CTNAG	3 cut(s)	11, 132, 146
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	128, 149, 188
LmnI	GCTCC	3 cut(s)	37, 293, 301
LpnPI	CCDG	3 cut(s)	99, 195, 312
Lsp1109I	GCAGC	3 cut(s)	236, 309, 362
MaeIII	GTNAC	2 cut(s)	263, 301
MalI	GATC	3 cut(s)	130, 151, 190
MboI	GATC	3 cut(s)	128, 149, 188
MboII	GAAGA	5 cut(s)	60, 107, 115, 350, 353
MflI	RGATCY	3 cut(s)	128, 149, 188
MhlI	GDGCHC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	6 cut(s)	45, 119, 131, 250, 255, 328
MspI	CCGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	319, 381
NdeII	GATC	3 cut(s)	128, 149, 188
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	301
NruI	TCGCGA	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	41, 307
PkrI	GCNGC	4 cut(s)	226, 321, 324, 377
Psp124BI	GAGCTC	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	3 cut(s)	128, 149, 188
RruI	TCGCGA	1 cut(s)	281
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	298
SatI	GCNGC	4 cut(s)	225, 320, 323, 376
Sau3AI	GATC	3 cut(s)	128, 149, 188
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	7 cut(s)	82, 111, 123, 229, 247, 298, 349
SfcI	CTRYAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
SsiI	CCGC	1 cut(s)	319
SstI	GAGCTC	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	52
TaqII	GACCGA	1 cut(s)	192
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	41, 307
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	3 cut(s)	224, 322, 375
Tsp45I	GTSAC	1 cut(s)	301
TspGWI	ACGGA	2 cut(s)	223, 277
XmiI	GTMKAC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.