Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Forward (+)

9573688 .. 9574312

Gene Structure 625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTCATTCTCAGTTTCTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACCATGAACAGATCTCCTTCTTCTTGTCTACCTTGCTCTGCCATGGAAGAGTTTGAACTCCTCTGCAACCACCTCTTCAGATCTCAGGTTTCTTTGGTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTATTCGGTCAACTGGAGAATGTATGGCGGCTCTGTCCGTATCCTCACCTCTGCCGACCACCCTTGGTTACCAGCCCTTGCTCATGACTTCTGTCGGAGCTCCGGAGTCGAATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGCTTTGATTAGGATTTGGGTTTTTGGGCTGCTTTGGCCTTTTTGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

4.97

Isoelectric Point (pI)

83.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	298
AciI	CCGC	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	2 cut(s)	296, 347
AluI	AGCT	2 cut(s)	296, 347
Alw21I	GWGCWC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	18
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	322, 373
AsuHPI	GGTGA	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	309, 360
BciVI	GTATCC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	247
BglII	AGATCT	4 cut(s)	59, 128, 149, 188
BisI	GCNGC	3 cut(s)	225, 323, 374
BlsI	GCNGC	3 cut(s)	226, 324, 375
BoxI	GACNNNNGTC	1 cut(s)	287
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	90, 259
BsaWI	WCCGGW	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	90, 259
BseMII	CTCAG	2 cut(s)	25, 146
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	24, 98
BseXI	GCAGC	2 cut(s)	309, 360
BshFI	GGCC	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	299
BsnI	GGCC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	59, 128, 149, 188
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	24, 145
BspEI	TCCGGA	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	90, 259
BssMI	GATC	4 cut(s)	59, 128, 149, 188
BssT1I	CCWWGG	2 cut(s)	90, 259
Bst6I	CTCTTC	2 cut(s)	90, 128
BstDEI	CTNAG	2 cut(s)	11, 132
BstDSI	CCRYGG	1 cut(s)	90
BstEII	GGTNACC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	62, 131, 152, 191
BstMBI	GATC	4 cut(s)	59, 128, 149, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 379
BstPAI	GACNNNNGTC	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	309, 360
BstX2I	RGATCY	4 cut(s)	59, 128, 149, 188
BstYI	RGATCY	4 cut(s)	59, 128, 149, 188
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	18
CciI	TCATGA	1 cut(s)	279
CviAII	CATG	3 cut(s)	52, 91, 280
CviJI	RGCY	7 cut(s)	227, 271, 296, 322, 347, 373, 382
CviKI_1	RGCY	7 cut(s)	227, 271, 296, 322, 347, 373, 382
DdeI	CTNAG	2 cut(s)	11, 132
DpnI	GATC	4 cut(s)	61, 130, 151, 190
DpnII	GATC	4 cut(s)	59, 128, 149, 188
Eam1104I	CTCTTC	2 cut(s)	90, 128
EarI	CTCTTC	2 cut(s)	90, 128
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	90, 259
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	90, 259
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	90, 259
FaeI	CATG	3 cut(s)	55, 94, 283
FaiI	YATR	6 cut(s)	53, 92, 183, 221, 281, 316
FatI	CATG	3 cut(s)	51, 90, 279
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	225, 323, 374
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	3 cut(s)	225, 323, 374
GluI	GCNGC	3 cut(s)	225, 323, 374
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	3 cut(s)	55, 94, 283
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	2 cut(s)	302, 307
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	77, 207
Hpy188I	TCNGA	2 cut(s)	128, 293
Hpy188III	TCNNGA	3 cut(s)	38, 280, 299
Hpy8I	GTNNAC	2 cut(s)	77, 207
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	114, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 379
HpyF3I	CTNAG	2 cut(s)	11, 132
Hsp92II	CATG	3 cut(s)	55, 94, 283
Kpn2I	TCCGGA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	59, 128, 149, 188
LmnI	GCTCC	3 cut(s)	37, 293, 301
LpnPI	CCDG	4 cut(s)	119, 195, 281, 312
Lsp1109I	GCAGC	2 cut(s)	309, 360
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	61, 130, 151, 190
MboI	GATC	4 cut(s)	59, 128, 149, 188
MboII	GAAGA	6 cut(s)	60, 107, 115, 183, 350, 353
MflI	RGATCY	4 cut(s)	59, 128, 149, 188
MhlI	GDGCHC	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	2 cut(s)	271, 310
MnlI	CCTC	5 cut(s)	45, 119, 131, 250, 255
MroI	TCCGGA	1 cut(s)	298
MspI	CCGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	319, 379
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	4 cut(s)	59, 128, 149, 188
NlaIII	CATG	3 cut(s)	55, 94, 283
PagI	TCATGA	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	226, 324, 375
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PshAI	GACNNNNGTC	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	4 cut(s)	59, 128, 149, 188
SacI	GAGCTC	1 cut(s)	298
SatI	GCNGC	3 cut(s)	225, 323, 374
Sau3AI	GATC	4 cut(s)	59, 128, 149, 188
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	6 cut(s)	82, 123, 138, 247, 298, 349
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
SsiI	CCGC	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	90, 259
TaqI	TCGA	1 cut(s)	305
TaqII	GACCGA	1 cut(s)	192
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	322, 373
TspDTI	ATGAA	2 cut(s)	68, 351
TspGWI	ACGGA	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.