Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004876

Physical Location & Seq

Genomic Coordinates Forward (+)

13798200 .. 13799078

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTGATTCCTCACCCAAGTGGTGTTTTGATTTCCTTGTTTTCCTATTCTTTTGCATCTGATTTTGTCCTCACTGTTTCAAATCTGCTTTTAGATCTTAGATCTGAATCTCTAAGATTTATTCTCAGTTTTGTTCTCATGGTCATTCTCAGTTTTTGTTCTACCTTTGCTCCTCAAGATGTCCAAACCGTGAACATATCTCCTTCTTCTTGTCTACCTTGCTCTGCCATGGAAGAGTTCCACCTCCTCTGCAACCACCTCTTCAGATCTCAGATTTCTTTGCTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTAATCGGTCAATTAGAGATTGTACGGAGGCTCTGTCCTCCTCACCTCTGTCAACCACCCTTGGTTATCATCCCTTGCTCATGACTTCTGTCGAAGCTCCGGAGTCGAATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGTTTTGATTAAGCTTTGGGTTTTTTGGGCTGCTTTGGCCTTTTTGTTTTCGGCTGTTTTCATTCTTGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.75

Weight (kDa)

5.23

Isoelectric Point (pI)

70.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325771 RchiOBHm_Chr1g0351971 RchiOBHm_Chr1g0355201 RchiOBHm_Chr2g0084931 RchiOBHm_Chr2g0108911 RchiOBHm_Chr3g0464351 RchiOBHm_Chr4g0404371 RchiOBHm_Chr4g0409181 RchiOBHm_Chr4g0442361 RchiOBHm_Chr6g0289721 RchiOBHm_Chr6g0310201 RchiOBHm_Chr7g0190511 RchiOBHm_Chr7g0195961 RchiOBHm_Chr7g0203491 RchiOBHm_Chr7g0222001 RchiOBHm_Chr7g0239901
rosa_laevigata	RLG00000000203 RLG00000009058 RLG00000013220 RLG00000017534 RLG00000018330 RLG00000034976 RLG00000035047 RLG00000036320 RLG00000036665
rosa_multiflora	Rmu_sc0001395.1_g000021
rosa_roxburghii	Rroxscaffold_1G00032980 Rroxscaffold_4G00331390
rosa_samantha	Rh1DG255300 Rh4DG140100 Rh7CG033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	214
AccIII	TCCGGA	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	81
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	2 cut(s)	431, 493
AluI	AGCT	2 cut(s)	431, 493
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	2 cut(s)	457, 509
AsuHPI	GGTGA	3 cut(s)	5, 16, 369
BbvI	GCAGC	2 cut(s)	444, 496
BglII	AGATCT	5 cut(s)	94, 101, 266, 287, 326
BisI	GCNGC	2 cut(s)	458, 510
BlsI	GCNGC	2 cut(s)	459, 511
BmsI	GCATC	1 cut(s)	65
BoxI	GACNNNNGTC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpuEI	CTTGAG	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	228, 394
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 353, 383
Bse8I	GATNNNNATC	1 cut(s)	106
BseAI	TCCGGA	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	228, 394
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	139, 163, 284
BseRI	GAGGAG	3 cut(s)	162, 236, 364
BseXI	GCAGC	2 cut(s)	444, 496
BshFI	GGCC	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	434
BsnI	GGCC	1 cut(s)	518
Bsp13I	TCCGGA	1 cut(s)	433
Bsp143I	GATC	5 cut(s)	94, 101, 266, 287, 326
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	3 cut(s)	138, 162, 283
BspEI	TCCGGA	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	228, 394
BssMI	GATC	5 cut(s)	94, 101, 266, 287, 326
BssT1I	CCWWGG	2 cut(s)	228, 394
Bst4CI	ACNGT	2 cut(s)	76, 190
Bst6I	CTCTTC	2 cut(s)	228, 266
BstDEI	CTNAG	6 cut(s)	98, 113, 125, 149, 270, 284
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	5 cut(s)	97, 104, 269, 290, 329
BstMBI	GATC	5 cut(s)	94, 101, 266, 287, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 515
BstPAI	GACNNNNGTC	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	444, 496
BstX2I	RGATCY	5 cut(s)	94, 101, 266, 287, 326
BstYI	RGATCY	5 cut(s)	94, 101, 266, 287, 326
BsuRI	GGCC	1 cut(s)	518
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	72
CciI	TCATGA	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	3 cut(s)	139, 229, 415
CviJI	RGCY	7 cut(s)	365, 431, 457, 493, 509, 518, 533
CviKI_1	RGCY	7 cut(s)	365, 431, 457, 493, 509, 518, 533
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	6 cut(s)	98, 113, 125, 149, 270, 284
DpnI	GATC	5 cut(s)	96, 103, 268, 289, 328
DpnII	GATC	5 cut(s)	94, 101, 266, 287, 326
Eam1104I	CTCTTC	2 cut(s)	228, 266
EarI	CTCTTC	2 cut(s)	228, 266
Eco130I	CCWWGG	2 cut(s)	228, 394
Eco57I	CTGAAG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	228, 394
ErhI	CCWWGG	2 cut(s)	228, 394
FaeI	CATG	3 cut(s)	142, 232, 418
FaiI	YATR	7 cut(s)	140, 197, 230, 321, 416, 451, 550
FatI	CATG	3 cut(s)	138, 228, 414
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	458, 510
FokI	GGATG	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	458, 510
GluI	GCNGC	2 cut(s)	458, 510
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	434
Hin1II	CATG	3 cut(s)	142, 232, 418
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	4 cut(s)	7, 107, 437, 442
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	3 cut(s)	5, 16, 369
Hpy166II	GTNNAC	3 cut(s)	193, 215, 387
Hpy188I	TCNGA	4 cut(s)	61, 106, 266, 273
Hpy188III	TCNNGA	3 cut(s)	176, 415, 434
Hpy8I	GTNNAC	3 cut(s)	193, 215, 387
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	76, 190
HpyCH4V	TGCA	3 cut(s)	56, 252, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 515
HpyF3I	CTNAG	6 cut(s)	98, 113, 125, 149, 270, 284
Hsp92II	CATG	3 cut(s)	142, 232, 418
Kpn2I	TCCGGA	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	94, 101, 266, 287, 326
LmnI	GCTCC	2 cut(s)	175, 436
LpnPI	CCDG	1 cut(s)	447
Lsp1109I	GCAGC	2 cut(s)	444, 496
LweI	GCATC	1 cut(s)	65
MalI	GATC	5 cut(s)	96, 103, 268, 289, 328
MboI	GATC	5 cut(s)	94, 101, 266, 287, 326
MboII	GAAGA	6 cut(s)	198, 245, 253, 321, 485, 488
MflI	RGATCY	5 cut(s)	94, 101, 266, 287, 326
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	445
MroI	TCCGGA	1 cut(s)	433
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	454, 515
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	5 cut(s)	94, 101, 266, 287, 326
NlaIII	CATG	3 cut(s)	142, 232, 418
OliI	CACNNNNGTG	1 cut(s)	18
PagI	TCATGA	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	7, 107, 442
PkrI	GCNGC	2 cut(s)	459, 511
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PshAI	GACNNNNGTC	1 cut(s)	422
PsuI	RGATCY	5 cut(s)	94, 101, 266, 287, 326
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	2 cut(s)	458, 510
Sau3AI	GATC	5 cut(s)	94, 101, 266, 287, 326
SchI	GAGTC	1 cut(s)	446
SetI	ASST	7 cut(s)	167, 220, 246, 261, 382, 433, 495
SfaNI	GCATC	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	228, 394
TaaI	ACNGT	2 cut(s)	76, 190
TaqI	TCGA	2 cut(s)	426, 440
TaqII	GACCGA	1 cut(s)	330
TasI	AATT	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	7, 107, 442
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	2 cut(s)	457, 509
TspDTI	ATGAA	2 cut(s)	486, 529
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.