RLG00000000203

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0004876
Physical Location & Seq
Forward (+)
940000 .. 942880
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000203

Sequence Viewer

Length: 1149 bp
ATGACCTGTCGAATTCCCGGCGGTGCCTATGAGTGGTGGCAGTGGCAGGACGGACTCAGTGAGCCGGATCTGGAGAAATGGCTAGTGTTTCTGATTGCGAATTGGGAATCGATGTGGCTTGATGGGAAGCCGCCTTGGTCTGGGGCTCCTATTTCTTCTTCTGTCGTCAACCAAGAGATCCGATTGGAGGTTGATGTCGTGGTGGACGGGTTGGTGGCTGGTATTCCAGATGCTTTTGTTGGATTTCAGCTGGGATCGGAAAAGGGAAACGACTCTCATGGTGGATTTCGGCGGGACTGGCCTCGGGTCGAGGAACTGATGCATCTATGGCGAAGTCCGTATCCTTGGCGGCTGGCCGGAGATTGGGATTGTCTTTTGAGATCAGGATCGGGATTGGAGCCGGTTGTCGACTTCAGCGTTGGGAGTGGCTTCTGCTGCAGGCTGGTGGGGGAAGTGAAGATCCGTCTGGGTCGCCCAGGAATGATGTGGTGGGCTGGCGGTGGTGATTGTGGGGTGTTCCCTTCTACTGGTATCGGCGACGGCGCATCTGATCTTAGATCTAAATCTCTAAGATTTATTCTCAGTTTTGTTCTCATGGTCATTCTCAGTTTTTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACCGTGAACAGATCTCCTTCTTCTTGTCTACCTTGCTCTGCCATGGAAGAGTTCCACCTCCTCTGCAACCACCTCTTCAGATCTCAGCTCTCTTTGCTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTAATCGGTCAATTGGAGAATGTACGGAGGCTCTGCCCTCCTCACCTCTGCCGACCACCCTTGGTTACCATCCCTTGCTCATGACTTCCGTCGGAGCGCCGGAGTCGAATCTGCTATGGTGGCTGCAAGTTGGAGATGAAGAAGAAGCTTTGATTAAGATTTGGATGATATCTCTTAAGCTCTGCCATGGGCAAGCAGCTAGCACAGTGTCGACAAAGCGGTGGCTCCAGGACGTCCGTAGTCCATACACACTGATACGCTACCGATTTTCATTTTCGGGCTACCGGAGTCTGGTGATTTCCTTCTTTGTTAATCTTGACCTTCCTCCAAAATTCTCAGCAACATTAGATTGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

42.81

Weight (kDa)

5.75

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1026
AccB1I GGYRCC 1 cut(s) 23
AccI GTMKAC 3 cut(s) 408, 670, 1001
AciI CCGC 6 cut(s) 21, 131, 292, 349, 498, 1009
AclWI GGATC 5 cut(s) 75, 172, 262, 394, 454
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 2 cut(s) 12, 1121
AcuI CTGAAG 2 cut(s) 397, 703
AcyI GRCGYC 1 cut(s) 1023
AfaI GTAC 1 cut(s) 814
AfiI CCNNNNNNNGG 6 cut(s) 33, 140, 187, 363, 527, 1081
AflII CTTAAG 1 cut(s) 965
AjnI CCWGG 2 cut(s) 475, 1017
AluBI AGCT 5 cut(s) 250, 730, 938, 970, 989
AluI AGCT 5 cut(s) 250, 730, 938, 970, 989
AlwI GGATC 5 cut(s) 75, 172, 262, 394, 454
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 3 cut(s) 299, 354, 1143
ApeKI GCWGC 3 cut(s) 435, 913, 986
ApoI RAATTY 2 cut(s) 12, 1121
AspLEI GCGC 2 cut(s) 545, 889
AspS9I GGNCC 1 cut(s) 1143
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 3 cut(s) 515, 825, 1096
AsuNHI GCTAGC 1 cut(s) 989
AvaI CYCGRG 1 cut(s) 303
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 422, 900, 998
BccI CCATC 2 cut(s) 116, 867
BceAI ACGGC 1 cut(s) 556
BciT130I CCWGG 2 cut(s) 477, 1019
BciVI GTATCC 1 cut(s) 351
BcnI CCSGG 1 cut(s) 18
BfaI CTAG 3 cut(s) 83, 990, 1147
BfmI CTRYAG 1 cut(s) 436
BfoI RGCGCY 1 cut(s) 890
BfrI CTTAAG 1 cut(s) 965
BfuI GTATCC 1 cut(s) 351
BglII AGATCT 5 cut(s) 557, 653, 722, 743, 782
BisI GCNGC 5 cut(s) 131, 350, 436, 914, 987
BlsI GCNGC 5 cut(s) 132, 351, 437, 915, 988
Bme1390I CCNGG 3 cut(s) 18, 477, 1019
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 1143
BmiI GGNNCC 4 cut(s) 25, 147, 399, 1016
BmrFI CCNGG 3 cut(s) 18, 477, 1019
BmsI GCATC 4 cut(s) 220, 309, 331, 554
BmtI GCTAGC 1 cut(s) 993
BoxI GACNNNNGTC 1 cut(s) 878
BplI GAGNNNNNCTC 2 cut(s) 772, 804
BpmI CTGGAG 2 cut(s) 92, 1001
BpuEI CTTGAG 1 cut(s) 615
BpuMI CCSGG 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 110
BsaBI GATNNNNATC 2 cut(s) 385, 562
BsaHI GRCGYC 1 cut(s) 1023
BsaJI CCNNGG 7 cut(s) 134, 302, 344, 475, 684, 850, 976
BsaWI WCCGGW 1 cut(s) 1074
Bsc4I CCNNNNNNNGG 6 cut(s) 33, 140, 187, 363, 527, 1081
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 302, 532
Bse8I GATNNNNATC 2 cut(s) 385, 562
BseBI CCWGG 2 cut(s) 477, 1019
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 7 cut(s) 134, 302, 344, 475, 684, 850, 976
BseGI GGATG 2 cut(s) 859, 960
BseJI GATNNNNATC 2 cut(s) 385, 562
BseLI CCNNNNNNNGG 6 cut(s) 33, 140, 187, 363, 527, 1081
BseMII CTCAG 5 cut(s) 70, 595, 619, 740, 1140
BseNI ACTGG 2 cut(s) 302, 532
BseRI GAGGAG 3 cut(s) 618, 692, 820
BseXI GCAGC 3 cut(s) 422, 900, 998
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 3 cut(s) 301, 356, 1145
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 6 cut(s) 18, 65, 357, 401, 890, 1075
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 6 cut(s) 33, 140, 187, 363, 527, 1081
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 3 cut(s) 301, 356, 1145
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 148
Bsp19I CCATGG 2 cut(s) 684, 976
BspACI CCGC 6 cut(s) 21, 131, 292, 349, 498, 1009
BspANI GGCC 3 cut(s) 301, 356, 1145
BspCNI CTCAG 5 cut(s) 69, 594, 618, 739, 1139
BspDI ATCGAT 1 cut(s) 110
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 4 cut(s) 25, 147, 399, 1016
BspMAI CTGCAG 1 cut(s) 440
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 5 cut(s) 75, 172, 262, 394, 454
BspT107I GGYRCC 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 965
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 2 cut(s) 302, 532
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 7 cut(s) 134, 302, 344, 475, 684, 850, 976
BssNI GRCGYC 1 cut(s) 1023
BssT1I CCWWGG 5 cut(s) 134, 344, 684, 850, 976
Bst2UI CCWGG 2 cut(s) 477, 1019
Bst4CI ACNGT 2 cut(s) 646, 997
Bst6I CTCTTC 2 cut(s) 684, 722
BstACI GRCGYC 1 cut(s) 1023
BstAFI CTTAAG 1 cut(s) 965
BstC8I GCNNGC 5 cut(s) 354, 440, 496, 984, 991
BstDEI CTNAG 8 cut(s) 56, 554, 569, 581, 605, 726, 740, 1126
BstDSI CCRYGG 2 cut(s) 684, 976
BstEII GGTNACC 1 cut(s) 854
BstF5I GGATG 2 cut(s) 859, 960
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 2 cut(s) 545, 889
BstMWI GCNNNNNNNGC 5 cut(s) 298, 328, 435, 736, 910
BstNI CCWGG 2 cut(s) 477, 1019
BstPAI GACNNNNGTC 1 cut(s) 878
BstPI GGTNACC 1 cut(s) 854
BstSCI CCNGG 3 cut(s) 16, 475, 1017
BstSFI CTRYAG 1 cut(s) 436
BstV1I GCAGC 3 cut(s) 422, 900, 998
BstX2I RGATCY 8 cut(s) 67, 177, 459, 557, 653, 722, 743, 782
BstYI RGATCY 8 cut(s) 67, 177, 459, 557, 653, 722, 743, 782
Bsu15I ATCGAT 1 cut(s) 110
BsuI GTATCC 1 cut(s) 351
BsuRI GGCC 3 cut(s) 301, 356, 1145
BsuTUI ATCGAT 1 cut(s) 110
BtgI CCRYGG 2 cut(s) 684, 976
BtsCI GGATG 2 cut(s) 859, 960
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 4 cut(s) 47, 64, 1002, 1040
Cac8I GCNNGC 5 cut(s) 354, 440, 496, 984, 991
CciI TCATGA 1 cut(s) 870
CfoI GCGC 2 cut(s) 545, 889
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 1143
ClaI ATCGAT 1 cut(s) 110
Csp6I GTAC 1 cut(s) 813
CviAII CATG 5 cut(s) 278, 595, 685, 871, 977
CviQI GTAC 1 cut(s) 813
DdeI CTNAG 8 cut(s) 56, 554, 569, 581, 605, 726, 740, 1126
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 684, 722
EarI CTCTTC 2 cut(s) 684, 722
Eco130I CCWWGG 5 cut(s) 134, 344, 684, 850, 976
Eco24I GRGCYC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 960
Eco57I CTGAAG 2 cut(s) 397, 703
Eco88I CYCGRG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 854
EcoO65I GGTNACC 1 cut(s) 854
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 475, 1017
EcoRV GATATC 1 cut(s) 960
EcoT14I CCWWGG 5 cut(s) 134, 344, 684, 850, 976
EcoT22I ATGCAT 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 5 cut(s) 134, 344, 684, 850, 976
FaeI CATG 5 cut(s) 281, 598, 688, 874, 980
FaqI GGGAC 1 cut(s) 308
FatI CATG 5 cut(s) 277, 594, 684, 870, 976
FauI CCCGC 1 cut(s) 285
FblI GTMKAC 3 cut(s) 408, 670, 1001
Fnu4HI GCNGC 5 cut(s) 131, 350, 436, 914, 987
FokI GGATG 2 cut(s) 846, 967
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 5 cut(s) 131, 350, 436, 914, 987
FspBI CTAG 3 cut(s) 83, 990, 1147
GlaI GCGC 2 cut(s) 544, 888
GluI GCNGC 5 cut(s) 131, 350, 436, 914, 987
GsaI CCCAGC 1 cut(s) 254
GsuI CTGGAG 2 cut(s) 92, 1001
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 3 cut(s) 301, 356, 1145
HapII CCGG 6 cut(s) 18, 65, 357, 401, 890, 1075
HhaI GCGC 2 cut(s) 545, 889
Hin1I GRCGYC 1 cut(s) 1023
Hin1II CATG 5 cut(s) 281, 598, 688, 874, 980
Hin6I GCGC 2 cut(s) 543, 887
HinP1I GCGC 2 cut(s) 543, 887
HincII GTYRAC 3 cut(s) 169, 409, 1002
HindII GTYRAC 3 cut(s) 169, 409, 1002
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 6 cut(s) 54, 107, 272, 893, 898, 1078
HpaII CCGG 6 cut(s) 18, 65, 357, 401, 890, 1075
HphI GGTGA 3 cut(s) 515, 825, 1096
Hpy166II GTNNAC 6 cut(s) 169, 205, 409, 649, 671, 1002
Hpy188I TCNGA 6 cut(s) 93, 182, 259, 550, 722, 884
Hpy188III TCNNGA 7 cut(s) 71, 227, 384, 390, 632, 871, 1106
Hpy8I GTNNAC 6 cut(s) 169, 205, 409, 649, 671, 1002
Hpy99I CGWCG 2 cut(s) 542, 884
HpyAV CCTTC 4 cut(s) 531, 669, 1102, 1121
HpyCH4III ACNGT 2 cut(s) 646, 997
HpyCH4IV ACGT 1 cut(s) 1023
HpyCH4V TGCA 4 cut(s) 322, 438, 708, 916
HpyF10VI GCNNNNNNNGC 5 cut(s) 298, 328, 435, 736, 910
HpyF3I CTNAG 8 cut(s) 56, 554, 569, 581, 605, 726, 740, 1126
HpySE526I ACGT 1 cut(s) 1023
Hsp92I GRCGYC 1 cut(s) 1023
Hsp92II CATG 5 cut(s) 281, 598, 688, 874, 980
HspAI GCGC 2 cut(s) 543, 887
LmnI GCTCC 5 cut(s) 151, 397, 631, 884, 1020
Lsp1109I GCAGC 3 cut(s) 422, 900, 998
LweI GCATC 4 cut(s) 220, 309, 331, 554
MaeI CTAG 3 cut(s) 83, 990, 1147
MaeII ACGT 1 cut(s) 1023
MaeIII GTNAC 1 cut(s) 854
MboII GAAGA 9 cut(s) 147, 150, 469, 654, 701, 709, 777, 941, 944
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 8 cut(s) 67, 177, 459, 557, 653, 722, 743, 782
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 4 cut(s) 12, 100, 801, 1121
MlyI GAGTC 4 cut(s) 48, 266, 902, 1087
MmeI TCCRAC 3 cut(s) 220, 862, 901
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 3 cut(s) 945, 966, 1101
MspA1I CMGCKG 1 cut(s) 250
MspCI CTTAAG 1 cut(s) 965
MspI CCGG 6 cut(s) 18, 65, 357, 401, 890, 1075
MspR9I CCNGG 3 cut(s) 18, 477, 1019
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 2 cut(s) 477, 1019
MwoI GCNNNNNNNGC 5 cut(s) 298, 328, 435, 736, 910
NciI CCSGG 1 cut(s) 18
NcoI CCATGG 2 cut(s) 684, 976
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 5 cut(s) 281, 598, 688, 874, 980
NlaIV GGNNCC 4 cut(s) 25, 147, 399, 1016
NsiI ATGCAT 1 cut(s) 324
PagI TCATGA 1 cut(s) 870
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PfeI GAWTC 2 cut(s) 107, 898
PfoI TCCNGGA 1 cut(s) 1017
PkrI GCNGC 5 cut(s) 132, 351, 437, 915, 988
PleI GAGTC 4 cut(s) 48, 266, 901, 1086
PpsI GAGTC 4 cut(s) 48, 266, 901, 1086
PshAI GACNNNNGTC 1 cut(s) 878
Psp6I CCWGG 2 cut(s) 475, 1017
PspEI GGTNACC 1 cut(s) 854
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 2 cut(s) 475, 1017
PspN4I GGNNCC 4 cut(s) 25, 147, 399, 1016
PspPI GGNCC 1 cut(s) 1143
PstI CTGCAG 1 cut(s) 440
PsuI RGATCY 8 cut(s) 67, 177, 459, 557, 653, 722, 743, 782
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 814
RsaNI GTAC 1 cut(s) 813
SalI GTCGAC 2 cut(s) 407, 1000
SaqAI TTAA 3 cut(s) 945, 966, 1101
SatI GCNGC 5 cut(s) 131, 350, 436, 914, 987
Sau96I GGNCC 1 cut(s) 1143
SchI GAGTC 4 cut(s) 48, 266, 902, 1087
ScrFI CCNGG 3 cut(s) 18, 477, 1019
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 4 cut(s) 220, 309, 331, 554
SfcI CTRYAG 1 cut(s) 436
SmlI CTYRAG 2 cut(s) 630, 965
SmoI CTYRAG 2 cut(s) 630, 965
Sse9I AATT 4 cut(s) 12, 100, 801, 1121
SsiI CCGC 6 cut(s) 21, 131, 292, 349, 498, 1009
SspMI CTAG 3 cut(s) 83, 990, 1147
StyD4I CCNGG 3 cut(s) 16, 475, 1017
StyI CCWWGG 5 cut(s) 134, 344, 684, 850, 976
TaaI ACNGT 2 cut(s) 646, 997
TaiI ACGT 1 cut(s) 1026
TaqI TCGA 6 cut(s) 10, 110, 309, 408, 896, 1001
TaqII GACCGA 1 cut(s) 786
TasI AATT 4 cut(s) 12, 100, 801, 1121
TauI GCSGC 2 cut(s) 133, 352
TfiI GAWTC 2 cut(s) 107, 898
Tru1I TTAA 3 cut(s) 945, 966, 1101
Tru9I TTAA 3 cut(s) 945, 966, 1101
TscAI CASTG 4 cut(s) 47, 64, 1002, 1047
TseI GCWGC 3 cut(s) 435, 913, 986
TspDTI ATGAA 2 cut(s) 942, 1050
TspGWI ACGGA 6 cut(s) 66, 327, 452, 830, 868, 1016
TspRI CASTG 4 cut(s) 47, 64, 1002, 1047
Vha464I CTTAAG 1 cut(s) 965
XapI RAATTY 2 cut(s) 12, 1121
XcmI CCANNNNNNNNNTGG 1 cut(s) 483
XmiI GTMKAC 3 cut(s) 408, 670, 1001
XspI CTAG 3 cut(s) 83, 990, 1147
ZraI GACGTC 1 cut(s) 1024
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.