RLG00000018330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004876
Physical Location & Seq
Forward (+)
28394836 .. 28396227
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018330

Sequence Viewer

Length: 516 bp
ATGGTCATTCTCAGTTTTTGTTCTGCCTTTGCTCCTCAAGATGTCCAAACCGTGAACAGATCTCCTTCTTCTTGTCTACCTTGCTCTGCCATGGAAGAGTTTGAACTCCTCTGCAACCACCTCTTCAGATCTCAGGTTTCTTTGTTAAGATCTATCTTGGTTTGGTTGTTGTTATCCTTTTATGCGAGATCTTCTCGTAATCGGTCAATTGGAGAATGTATGGCGGCTCTGTCCGTATCCTCACCTCTGCTAACCACCCTTGGTTACCAGCCCTTGCTCATGACTTCCGTCGGAGCTCTGGAGTCGAATCTGCTATGGTGGTTGCAAGTTGGAGATGAAGAAGAACTAGGATTTTTATTGCGGTCCAATTTCTTGTGTTTGATATGTGATTTTTGGATTGATAATCTCAACCCTTTAAGAATGTGGTGGTCTTACCCTCTCGAGGACAAGCCAGAATTCATTAACATTGTTGAGATGGGGATAACGTGCCTGATGATTGCTCCCAGGGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

4.55

Isoelectric Point (pI)

74.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 76
AciI CCGC 2 cut(s) 224, 361
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 440
ApoI RAATTY 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 234
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 363
BanII GRGCYC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 1 cut(s) 247
BfaI CTAG 1 cut(s) 347
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 4 cut(s) 59, 128, 149, 188
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 505
BoxI GACNNNNGTC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 21
BsaJI CCNNGG 4 cut(s) 90, 259, 503, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 4 cut(s) 90, 259, 503, 504
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 25, 146
BseRI GAGGAG 2 cut(s) 24, 98
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 442
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 4 cut(s) 59, 128, 149, 188
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 2 cut(s) 224, 361
BspCNI CTCAG 2 cut(s) 24, 145
BspHI TCATGA 1 cut(s) 279
BssECI CCNNGG 4 cut(s) 90, 259, 503, 504
BssMI GATC 4 cut(s) 59, 128, 149, 188
BssT1I CCWWGG 2 cut(s) 90, 259
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 90, 128
BstDEI CTNAG 2 cut(s) 11, 132
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 4 cut(s) 62, 131, 152, 191
BstMBI GATC 4 cut(s) 59, 128, 149, 188
BstNI CCWGG 1 cut(s) 505
BstPAI GACNNNNGTC 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 503
BstX2I RGATCY 4 cut(s) 59, 128, 149, 188
BstYI RGATCY 4 cut(s) 59, 128, 149, 188
BsuI GTATCC 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 514
CciI TCATGA 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 363
CviAII CATG 2 cut(s) 91, 280
CviJI RGCY 4 cut(s) 227, 271, 296, 451
CviKI_1 RGCY 4 cut(s) 227, 271, 296, 451
DdeI CTNAG 2 cut(s) 11, 132
DpnI GATC 4 cut(s) 61, 130, 151, 190
DpnII GATC 4 cut(s) 59, 128, 149, 188
Eam1104I CTCTTC 2 cut(s) 90, 128
EarI CTCTTC 2 cut(s) 90, 128
Ecl136II GAGCTC 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 90, 259
Eco24I GRGCYC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 440
Eco91I GGTNACC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 90, 259
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 2 cut(s) 90, 259
FaeI CATG 2 cut(s) 94, 283
FaiI YATR 6 cut(s) 92, 183, 221, 281, 316, 385
FatI CATG 2 cut(s) 90, 279
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 347
GluI GCNGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 320
Hin1II CATG 2 cut(s) 94, 283
HinfI GANTC 2 cut(s) 302, 307
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 55, 77
Hpy188I TCNGA 2 cut(s) 128, 293
Hpy188III TCNNGA 4 cut(s) 38, 280, 299, 440
Hpy8I GTNNAC 2 cut(s) 55, 77
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 2 cut(s) 114, 325
HpyF3I CTNAG 2 cut(s) 11, 132
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 2 cut(s) 94, 283
Kzo9I GATC 4 cut(s) 59, 128, 149, 188
LmnI GCTCC 3 cut(s) 37, 293, 505
LpnPI CCDG 6 cut(s) 119, 281, 284, 465, 490, 503
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 263
MalI GATC 4 cut(s) 61, 130, 151, 190
MboI GATC 4 cut(s) 59, 128, 149, 188
MboII GAAGA 6 cut(s) 60, 107, 115, 183, 350, 353
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 4 cut(s) 59, 128, 149, 188
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 207, 367, 455
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 271, 310
MnlI CCTC 7 cut(s) 45, 119, 131, 250, 255, 436, 447
MseI TTAA 4 cut(s) 146, 416, 462, 514
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 505
NcoI CCATGG 1 cut(s) 90
NdeII GATC 4 cut(s) 59, 128, 149, 188
NlaIII CATG 2 cut(s) 94, 283
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 1 cut(s) 279
PasI CCCWGGG 1 cut(s) 504
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 503
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 503
PspPI GGNCC 1 cut(s) 363
PsuI RGATCY 4 cut(s) 59, 128, 149, 188
SacI GAGCTC 1 cut(s) 298
SaqAI TTAA 4 cut(s) 146, 416, 462, 514
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 4 cut(s) 59, 128, 149, 188
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 1 cut(s) 298
SetI ASST 6 cut(s) 82, 123, 138, 247, 298, 488
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 363
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 2 cut(s) 36, 440
SmoI CTYRAG 2 cut(s) 36, 440
Sse9I AATT 3 cut(s) 207, 367, 455
SsiI CCGC 2 cut(s) 224, 361
SspMI CTAG 1 cut(s) 347
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 2 cut(s) 90, 259
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 305, 441
TaqII GACCGA 1 cut(s) 192
TasI AATT 3 cut(s) 207, 367, 455
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 4 cut(s) 146, 416, 462, 514
Tru9I TTAA 4 cut(s) 146, 416, 462, 514
TspDTI ATGAA 2 cut(s) 351, 448
TspGWI ACGGA 2 cut(s) 223, 277
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 1 cut(s) 455
XhoI CTCGAG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.