RchiOBHm_Chr1g0365221

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003355
Physical Location & Seq
Reverse (-)
56208507 .. 56210143
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1398 bp
ATGGAGTTGCTCTTGAAAATGTGTCTAGTCTCTCTTTTCTTTGGTTTTTGCTGCCTCTTTAAGTCATTTCTCCAAAGGAGAGACCAGTGCTGCTATCTACTGGCCTATGAGTGCTACAAAGCCAAAGAGGACTTGCAGCTCCAAACCGACACATGTGCGAAAATCGTCATGCAAAACAAGAATCTGGGGCTGGAAGATTTCAGGTTCCTCTTGAAAACCATTGTCAATTCCGGCATTGGTGAGGAAACATCCTGCCCAAGAAACATCCTCCAAGGCCGAGAAGCAACCCTAGCAGATTCACTCTCTGAGATGGATGAAACCATTTTCGATACACTTGACAACCTTTTCGCCAGGTACCCTTCAGTCTCCCCATCACAAATCGACATTCTCGTGGTCAATGTCTCCATGTTCTCCCCTTCACCCTCCCTAACATCTCGAATAGTGAACCGTTACAAGATGAGGGAGGACATCAAGACATTCAACCTCTCCGGAATGGGCTGCAGTGCAAGCCTAGTGGCCGTTGATGTTGTCCAGGGCTTGTTCAAGTCATACGAAGACTCATACGCCCTTGTTGTGAGCACAGAGTCCATGGCTCCTTTCTGGTATTGCGGCAGAGAAAAATCCATGATGCTTACCAACTGTTTGTTTCGGTTAGGAGGCTGTTCGATGCTGTTCACCAACAGAAGATACCTTAAGCACCAAGCTATCTTGAAATTGAAGACTTTGGTAAGAACACATATCGGCTCGAATGATGATGCTTACAATTCTTGCATACAGCTAGAAGATGATAGTGGTTACCTAGGTTTTCGGCTTACCAAATACCTCACAAAAGCAGCAGCTCTTGCTCTCACAATAAACCTACAAGTTCTAGTGCCAAAAGTACTTCCACTAAGGGAAATACTCCGGTACTTGGTGGAGTCTAGGCTGCGGAAGAAAAGTGGTACCAAGAGCCAAAACCTAGAAGTAGTTGGAGTTGGTTTGAATATGAAGGCCGGAATAGAGCACTTTTGTATCCACCCTGGTGGAAGAGCAATCATAGATGGGATTGGCAAGAGCTTAGCATTAAGCGAGTATGATCTCGAGCCGTCTAGAATGGCGCTTTTCCGATTTGGTAACACATCAGCTGCTGGGTTTTGGTATGCTTTAGGATACATGGAAGCCAAAAAGAGACTCAAGAAGGGTGATAGGATTCTTATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTTTGGGAAGTACTGAGGGACTTGGATGATGCCAATGTTTGGGAAAGCTGCATAGATAGTTACCCTCCACATATTATAGGCAACCCTTTCATGGAAAAGTATAGTTGGCTTAATGATGAATGCCTCAACTTTGTTAGGATTGATTTCAGCAAAATACTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

465

Amino Acids

52.58

Weight (kDa)

8.34

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 24 - 308 4.3e-110 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 332 - 414 3.9e-12 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 336 - 409 4.8e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1202
Acc65I GGTACC 2 cut(s) 354, 941
AccB1I GGYRCC 2 cut(s) 354, 941
AccB7I CCANNNNNTGG 1 cut(s) 1272
AccIII TCCGGA 1 cut(s) 488
AciI CCGC 2 cut(s) 609, 928
AcoI YGGCCR 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 5 cut(s) 356, 882, 908, 943, 1245
AfiI CCNNNNNNNGG 3 cut(s) 910, 1272, 1324
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 7 cut(s) 16, 214, 481, 544, 712, 718, 982
AjnI CCWGG 3 cut(s) 350, 531, 1018
AleI CACNNNNGTG 1 cut(s) 1020
AluBI AGCT 7 cut(s) 139, 704, 778, 839, 1056, 1124, 1281
AluI AGCT 7 cut(s) 139, 704, 778, 839, 1056, 1124, 1281
Alw21I GWGCWC 2 cut(s) 581, 1005
Alw26I GTCTC 5 cut(s) 34, 75, 370, 406, 1162
AlwNI CAGNNNCTG 1 cut(s) 1127
Ama87I CYCGRG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 488
AoxI GGCC 4 cut(s) 102, 274, 516, 990
ApeKI GCWGC 9 cut(s) 51, 90, 136, 498, 833, 836, 925, 1124, 1281
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp718I GGTACC 2 cut(s) 354, 941
AspA2I CCTAGG 1 cut(s) 799
AspLEI GCGC 1 cut(s) 1099
AsuHPI GGTGA 4 cut(s) 251, 411, 667, 1193
AvaI CYCGRG 1 cut(s) 1079
AvrII CCTAGG 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 994, 1027
BanI GGYRCC 2 cut(s) 354, 941
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 561, 725
Bbv12I GWGCWC 2 cut(s) 581, 1005
BbvI GCAGC 9 cut(s) 38, 77, 148, 485, 845, 848, 912, 1111, 1268
BccI CCATC 3 cut(s) 304, 379, 1034
BceAI ACGGC 2 cut(s) 503, 1069
BcgI CGANNNNNNTGC 3 cut(s) 137, 171, 1372
BciT130I CCWGG 3 cut(s) 352, 533, 1020
BciVI GTATCC 2 cut(s) 1022, 1142
BcoDI GTCTC 5 cut(s) 34, 75, 370, 406, 1162
BfaI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
BfmI CTRYAG 1 cut(s) 499
BfoI RGCGCY 1 cut(s) 1100
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 1202
BfuI GTATCC 2 cut(s) 1022, 1142
BlnI CCTAGG 1 cut(s) 799
BlpI GCTNAGC 1 cut(s) 1057
BmcAI AGTACT 2 cut(s) 882, 1245
Bme1390I CCNGG 3 cut(s) 352, 533, 1020
BmeT110I CYCGRG 1 cut(s) 1079
BmiI GGNNCC 4 cut(s) 206, 356, 594, 943
BmrFI CCNGG 3 cut(s) 352, 533, 1020
BmsI GCATC 4 cut(s) 618, 657, 745, 1252
BpiI GAAGAC 2 cut(s) 561, 725
Bpu1102I GCTNAGC 1 cut(s) 1057
BpuEI CTTGAG 1 cut(s) 1157
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 5 cut(s) 271, 532, 588, 799, 1018
BsaWI WCCGGW 2 cut(s) 488, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 910, 1272, 1324
Bse1I ACTGG 2 cut(s) 85, 105
BseAI TCCGGA 1 cut(s) 488
BseBI CCWGG 3 cut(s) 352, 533, 1020
BseDI CCNNGG 5 cut(s) 271, 532, 588, 799, 1018
BseGI GGATG 4 cut(s) 248, 264, 319, 1264
BseLI CCNNNNNNNGG 3 cut(s) 910, 1272, 1324
BseMII CTCAG 2 cut(s) 297, 1238
BseNI ACTGG 2 cut(s) 85, 105
BseXI GCAGC 9 cut(s) 38, 77, 148, 485, 845, 848, 912, 1111, 1268
BseYI CCCAGC 1 cut(s) 1127
BshFI GGCC 4 cut(s) 104, 276, 518, 992
BshNI GGYRCC 2 cut(s) 354, 941
BsiHKAI GWGCWC 2 cut(s) 581, 1005
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 4 cut(s) 231, 489, 904, 993
BslFI GGGAC 1 cut(s) 1265
BslI CCNNNNNNNGG 3 cut(s) 910, 1272, 1324
BsmAI GTCTC 5 cut(s) 34, 75, 370, 406, 1162
BsmFI GGGAC 1 cut(s) 1265
BsmI GAATGC 1 cut(s) 1358
BsnI GGCC 4 cut(s) 104, 276, 518, 992
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 1079
Bsp1286I GDGCHC 2 cut(s) 581, 1005
Bsp13I TCCGGA 1 cut(s) 488
Bsp143I GATC 1 cut(s) 1075
Bsp1720I GCTNAGC 1 cut(s) 1057
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 2 cut(s) 609, 928
BspANI GGCC 4 cut(s) 104, 276, 518, 992
BspCNI CTCAG 2 cut(s) 298, 1239
BspEI TCCGGA 1 cut(s) 488
BspLI GGNNCC 4 cut(s) 206, 356, 594, 943
BspMAI CTGCAG 1 cut(s) 503
BspMI ACCTGC 1 cut(s) 1202
BspQI GCTCTTC 1 cut(s) 1021
BspT107I GGYRCC 2 cut(s) 354, 941
BspTI CTTAAG 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 85, 105
BssECI CCNNGG 5 cut(s) 271, 532, 588, 799, 1018
BssMI GATC 1 cut(s) 1075
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 3 cut(s) 271, 588, 799
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 3 cut(s) 352, 533, 1020
Bst4CI ACNGT 2 cut(s) 449, 641
Bst6I CTCTTC 1 cut(s) 1021
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 4 cut(s) 306, 890, 1057, 1247
BstDSI CCRYGG 1 cut(s) 588
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 4 cut(s) 248, 264, 319, 1264
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 1 cut(s) 1099
BstKTI GATC 1 cut(s) 1078
BstMAI GTCTC 5 cut(s) 34, 75, 370, 406, 1162
BstMBI GATC 1 cut(s) 1075
BstMWI GCNNNNNNNGC 3 cut(s) 290, 507, 842
BstNI CCWGG 3 cut(s) 352, 533, 1020
BstNSI RCATGY 1 cut(s) 156
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 3 cut(s) 350, 531, 1018
BstSFI CTRYAG 1 cut(s) 499
BstV1I GCAGC 9 cut(s) 38, 77, 148, 485, 845, 848, 912, 1111, 1268
BstV2I GAAGAC 2 cut(s) 561, 725
BstXI CCANNNNNNTGG 1 cut(s) 1022
BsuI GTATCC 2 cut(s) 1022, 1142
BsuRI GGCC 4 cut(s) 104, 276, 518, 992
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 4 cut(s) 248, 264, 319, 1264
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 2 cut(s) 92, 508
BveI ACCTGC 1 cut(s) 1202
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 1127
CfoI GCGC 1 cut(s) 1099
Csp6I GTAC 5 cut(s) 355, 881, 907, 942, 1244
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 7 cut(s) 153, 169, 406, 589, 625, 1153, 1324
CviQI GTAC 5 cut(s) 355, 881, 907, 942, 1244
DdeI CTNAG 4 cut(s) 306, 890, 1057, 1247
DpnI GATC 1 cut(s) 1077
DpnII GATC 1 cut(s) 1075
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 1021
Eco130I CCWWGG 3 cut(s) 271, 588, 799
Eco31I GGTCTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 3 cut(s) 350, 531, 1018
EcoT14I CCWWGG 3 cut(s) 271, 588, 799
ErhI CCWWGG 3 cut(s) 271, 588, 799
FaeI CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
FaqI GGGAC 1 cut(s) 1265
FatI CATG 7 cut(s) 152, 168, 405, 588, 624, 1152, 1323
FokI GGATG 4 cut(s) 235, 251, 326, 1271
FspBI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
GlaI GCGC 1 cut(s) 1098
GsaI CCCAGC 1 cut(s) 1131
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 4 cut(s) 104, 276, 518, 992
HapII CCGG 4 cut(s) 231, 489, 904, 993
HhaI GCGC 1 cut(s) 1099
Hin1II CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
Hin6I GCGC 1 cut(s) 1097
HinP1I GCGC 1 cut(s) 1097
HinfI GANTC 7 cut(s) 181, 296, 557, 584, 917, 1170, 1189
HpaII CCGG 4 cut(s) 231, 489, 904, 993
HphI GGTGA 4 cut(s) 251, 411, 667, 1193
Hpy166II GTNNAC 2 cut(s) 445, 675
Hpy188I TCNGA 2 cut(s) 307, 1106
Hpy188III TCNNGA 9 cut(s) 13, 211, 435, 472, 489, 709, 1079, 1089, 1174
Hpy8I GTNNAC 2 cut(s) 445, 675
HpyAV CCTTC 4 cut(s) 369, 426, 982, 1171
HpyCH4III ACNGT 2 cut(s) 449, 641
HpyCH4V TGCA 7 cut(s) 136, 172, 501, 506, 771, 1224, 1284
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 507, 842
HpyF3I CTNAG 4 cut(s) 306, 890, 1057, 1247
Hsp92II CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
HspAI GCGC 1 cut(s) 1097
Kpn2I TCCGGA 1 cut(s) 488
KpnI GGTACC 2 cut(s) 358, 945
Kzo9I GATC 1 cut(s) 1075
LguI GCTCTTC 1 cut(s) 1021
LmnI GCTCC 3 cut(s) 144, 598, 1208
Lsp1109I GCAGC 9 cut(s) 38, 77, 148, 485, 845, 848, 912, 1111, 1268
LweI GCATC 4 cut(s) 618, 657, 745, 1252
MaeI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
MaeIII GTNAC 4 cut(s) 449, 794, 1112, 1292
MalI GATC 1 cut(s) 1077
MboI GATC 1 cut(s) 1075
MboII GAAGA 7 cut(s) 206, 566, 696, 730, 794, 943, 1038
MhlI GDGCHC 2 cut(s) 581, 1005
MluCI AATT 3 cut(s) 226, 713, 763
MlyI GAGTC 4 cut(s) 551, 593, 926, 1164
MmeI TCCRAC 1 cut(s) 949
MroI TCCGGA 1 cut(s) 488
MseI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
MslI CAYNNNNRTG 2 cut(s) 389, 1020
MspA1I CMGCKG 1 cut(s) 1124
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 4 cut(s) 231, 489, 904, 993
MspR9I CCNGG 3 cut(s) 352, 533, 1020
Mva1269I GAATGC 1 cut(s) 1358
MvaI CCWGG 3 cut(s) 352, 533, 1020
MwoI GCNNNNNNNGC 3 cut(s) 290, 507, 842
NcoI CCATGG 1 cut(s) 588
NdeII GATC 1 cut(s) 1075
NlaIII CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
NlaIV GGNNCC 4 cut(s) 206, 356, 594, 943
NmeAIII GCCGAG 1 cut(s) 302
NspI RCATGY 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 1020
PaeR7I CTCGAG 1 cut(s) 1079
PciI ACATGT 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 1021
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 1358
PfeI GAWTC 3 cut(s) 181, 296, 1189
PflMI CCANNNNNTGG 1 cut(s) 1272
PleI GAGTC 4 cut(s) 551, 592, 925, 1164
PpsI GAGTC 4 cut(s) 551, 592, 925, 1164
PscI ACATGT 1 cut(s) 152
Psp6I CCWGG 3 cut(s) 350, 531, 1018
PspEI GGTNACC 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 3 cut(s) 350, 531, 1018
PspN4I GGNNCC 4 cut(s) 206, 356, 594, 943
PstI CTGCAG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 1127
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 5 cut(s) 356, 882, 908, 943, 1245
RsaNI GTAC 5 cut(s) 355, 881, 907, 942, 1244
RseI CAYNNNNRTG 2 cut(s) 389, 1020
SapI GCTCTTC 1 cut(s) 1021
SaqAI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Sau3AI GATC 1 cut(s) 1075
ScaI AGTACT 2 cut(s) 882, 1245
SchI GAGTC 4 cut(s) 551, 593, 926, 1164
ScrFI CCNGG 3 cut(s) 352, 533, 1020
SduI GDGCHC 2 cut(s) 581, 1005
SfaNI GCATC 4 cut(s) 618, 657, 745, 1252
SfcI CTRYAG 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 1079
SlaI CTCGAG 1 cut(s) 1079
SmiMI CAYNNNNRTG 2 cut(s) 389, 1020
SmlI CTYRAG 3 cut(s) 692, 1079, 1172
SmoI CTYRAG 3 cut(s) 692, 1079, 1172
Sse9I AATT 3 cut(s) 226, 713, 763
SsiI CCGC 2 cut(s) 609, 928
SspI AATATT 1 cut(s) 1231
SspMI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
StyD4I CCNGG 3 cut(s) 350, 531, 1018
StyI CCWWGG 3 cut(s) 271, 588, 799
TaaI ACNGT 2 cut(s) 449, 641
TaqI TCGA 6 cut(s) 327, 381, 436, 665, 746, 1080
TasI AATT 3 cut(s) 226, 713, 763
TatI WGTACW 2 cut(s) 880, 1243
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 3 cut(s) 181, 296, 1189
Tru1I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Tru9I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
TscAI CASTG 2 cut(s) 92, 508
TseI GCWGC 9 cut(s) 51, 90, 136, 498, 833, 836, 925, 1124, 1281
TspDTI ATGAA 4 cut(s) 330, 1001, 1312, 1365
TspRI CASTG 2 cut(s) 92, 508
Van91I CCANNNNNTGG 1 cut(s) 1272
Vha464I CTTAAG 1 cut(s) 692
XbaI TCTAGA 1 cut(s) 1088
XceI RCATGY 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 1079
XmaJI CCTAGG 1 cut(s) 799
XspI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
ZrmI AGTACT 2 cut(s) 882, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.