RchiOBHm_Chr1g0384141

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004243
Physical Location & Seq
Reverse (-)
68149277 .. 68160176
10900 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGGACGAAAATTCGCAGAAGCTCGACAACACTGGCTACGAATCAATGACTCTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTTAGTGCAACAGAACGTACCCAGGACCGAAGGATCATTTACAGGGGTGCACGTGCTCTCTGTGTTCTGGCATGTGGTCTTGGCACTGAATGGGTTGAACCAATCGTCTCCGGCAGTGTCCATAGTGATGTCATGAAAATTACAATACCAGATGGCATGACTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATATTCAAATTTGAAGACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCAAGAAGCAGCTGTTGTTGTTCTTTCCGATAAAGCCGGGTCAACAAGTATAGTGAGGAATCTTGTGACTAGTTGTCTTCTTGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.61

Weight (kDa)

4.7

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 27 - 85 3.6e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 221, 518
AcsI RAATTY 3 cut(s) 10, 383, 395
AcvI CACGTG 1 cut(s) 233
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 7 cut(s) 61, 131, 157, 278, 357, 382, 389
AhdI GACNNNNNGTC 1 cut(s) 507
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AluBI AGCT 3 cut(s) 22, 415, 446
AluI AGCT 3 cut(s) 22, 415, 446
Alw21I GWGCWC 2 cut(s) 232, 238
Alw26I GTCTC 2 cut(s) 77, 292
Alw44I GTGCAC 1 cut(s) 228
AlwI GGATC 2 cut(s) 221, 518
AoxI GGCC 1 cut(s) 139
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 3 cut(s) 10, 383, 395
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 232
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 3 cut(s) 396, 503, 543
Bbv12I GWGCWC 2 cut(s) 232, 238
BbvI GCAGC 1 cut(s) 455
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 77, 292
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 1 cut(s) 504
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 203, 472
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 507
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 203, 472
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 3 cut(s) 396, 503, 543
BpuMI CCSGG 1 cut(s) 472
BsaAI YACGTR 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 37, 164
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 169, 352
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 37, 164
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 1 cut(s) 455
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 2 cut(s) 232, 238
BsiSI CCGG 2 cut(s) 291, 471
BsmAI GTCTC 2 cut(s) 77, 292
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 232, 238
Bsp143I GATC 2 cut(s) 213, 523
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 334
BspHI TCATGA 3 cut(s) 312, 367, 547
BspPI GGATC 2 cut(s) 221, 518
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 37, 164
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 213, 523
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 124, 181
Bst6I CTCTTC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 169, 352
BstKTI GATC 2 cut(s) 216, 526
BstMAI GTCTC 2 cut(s) 77, 292
BstMBI GATC 2 cut(s) 213, 523
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 201, 470
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 3 cut(s) 396, 503, 543
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 169, 352
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 30, 264, 301
CciI TCATGA 3 cut(s) 312, 367, 547
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 198
CviAII CATG 7 cut(s) 137, 147, 252, 313, 337, 368, 548
CviJI RGCY 6 cut(s) 22, 36, 141, 415, 446, 470
CviKI_1 RGCY 6 cut(s) 22, 36, 141, 415, 446, 470
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 215, 525
DpnII GATC 2 cut(s) 213, 523
DriI GACNNNNNGTC 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 7 cut(s) 140, 150, 255, 316, 340, 371, 551
FatI CATG 7 cut(s) 136, 146, 251, 312, 336, 367, 547
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 2 cut(s) 176, 359
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 504
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 291, 471
Hin1II CATG 7 cut(s) 140, 150, 255, 316, 340, 371, 551
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 5 cut(s) 41, 49, 88, 131, 493
HpaII CCGG 2 cut(s) 291, 471
Hpy166II GTNNAC 2 cut(s) 230, 477
Hpy188I TCNGA 2 cut(s) 93, 463
Hpy188III TCNNGA 6 cut(s) 61, 103, 313, 368, 437, 548
Hpy8I GTNNAC 2 cut(s) 230, 477
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 2 cut(s) 124, 181
HpyCH4IV ACGT 2 cut(s) 196, 232
HpyCH4V TGCA 3 cut(s) 78, 188, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 196, 232
Hsp92II CATG 7 cut(s) 140, 150, 255, 316, 340, 371, 551
Kzo9I GATC 2 cut(s) 213, 523
Lsp1109I GCAGC 1 cut(s) 455
MaeI CTAG 1 cut(s) 504
MaeII ACGT 2 cut(s) 196, 232
MaeIII GTNAC 1 cut(s) 499
MalI GATC 2 cut(s) 215, 525
MboI GATC 2 cut(s) 213, 523
MboII GAAGA 5 cut(s) 95, 118, 401, 503, 548
MhlI GDGCHC 2 cut(s) 232, 238
MluCI AATT 6 cut(s) 10, 152, 318, 383, 395, 551
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 4 cut(s) 106, 337, 417, 483
MseI TTAA 1 cut(s) 571
MslI CAYNNNNRTG 2 cut(s) 306, 546
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 2 cut(s) 291, 471
MspR9I CCNGG 2 cut(s) 203, 472
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 472
NdeII GATC 2 cut(s) 213, 523
NlaIII CATG 7 cut(s) 140, 150, 255, 316, 340, 371, 551
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 1 cut(s) 255
PagI TCATGA 3 cut(s) 312, 367, 547
PfeI GAWTC 4 cut(s) 41, 88, 131, 493
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 201
PspCI CACGTG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 2 cut(s) 306, 546
SaqAI TTAA 1 cut(s) 571
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 2 cut(s) 213, 523
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 203, 472
SduI GDGCHC 2 cut(s) 232, 238
SetI ASST 7 cut(s) 24, 117, 199, 235, 409, 417, 448
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 306, 546
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 6 cut(s) 10, 152, 318, 383, 395, 551
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 201, 470
TaaI ACNGT 2 cut(s) 124, 181
TaiI ACGT 2 cut(s) 199, 235
TaqI TCGA 2 cut(s) 24, 409
TaqII GACCGA 1 cut(s) 222
TasI AATT 6 cut(s) 10, 152, 318, 383, 395, 551
TfiI GAWTC 4 cut(s) 41, 88, 131, 493
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TscAI CASTG 3 cut(s) 37, 271, 301
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 6 cut(s) 135, 329, 364, 536, 549, 564
TspRI CASTG 3 cut(s) 37, 271, 301
VneI GTGCAC 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 3 cut(s) 10, 383, 395
XceI RCATGY 1 cut(s) 255
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.