RchiOBHm_Chr1g0317491

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003476
Physical Location & Seq
Reverse (-)
5036520 .. 5037377
858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54781

Sequence Viewer

Length: 501 bp
ATGAGCTGCGGAGAAAGCAAGGTTGTGTGTGTGACGGGAGCATCTGGTTTCATAGCATCATGGCTGGTGAAGCTCTTATTGCAACGAGGTTATACTGTCAAAGCCACGGTTCGGGACCCAGACGATCAAAAGAAAACAGAACACCTACTCTCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTAGAAGAAGGTTCTTTTGACCCTGCTGTTGATGGGTGTGAAGGTGTTTTTCATACAGCATCCCCTGTCCTACTCTCAGATTCATCTACTAATCCGCAGGCAGAATTAATTGACCCTGCTTTGAAGGGAACGCTTAATGTCCTCGGATCGTGTGTGAAGGTTCAGTCTATCAAAAGGGTGGTTATAACATCTTCTATAGTAGCAGTTGCATTTAATGGAAAACCTCTTACTGCTGATGTAATCATCGATGAATCTTGGTTTTCAGATCCTGCTTTTTGTGAAAAAGCGAAGGTTAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

166

Amino Acids

17.74

Weight (kDa)

5.35

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 107 5.5e-10 NmrA-like family
Epimerase PF01370 9 - 131 5.4e-15 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 140 1.2e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 11 - 131 1.1e-12 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 11 - 136 1.1e-06 Male sterility protein
NAD_binding_10 PF13460 13 - 134 5.7e-11 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AciI CCGC 2 cut(s) 9, 293
AclWI GGATC 2 cut(s) 352, 458
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 2 cut(s) 187, 322
AluBI AGCT 2 cut(s) 6, 73
AluI AGCT 2 cut(s) 6, 73
AlwI GGATC 2 cut(s) 352, 458
AlwNI CAGNNNCTG 1 cut(s) 467
ApeKI GCWGC 1 cut(s) 6
AseI ATTAAT 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 115
BccI CCATC 2 cut(s) 152, 224
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 116, 117
BmsI GCATC 3 cut(s) 50, 65, 266
Bsa29I ATCGAT 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 105, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 105, 340
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 288
BshVI ATCGAT 1 cut(s) 444
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 124, 344, 463
BspACI CCGC 2 cut(s) 9, 293
BspCNI CTCAG 1 cut(s) 287
BspDI ATCGAT 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 116, 117
BspPI GGATC 2 cut(s) 352, 458
BssECI CCNNGG 2 cut(s) 105, 340
BssMI GATC 3 cut(s) 124, 344, 463
Bst4CI ACNGT 2 cut(s) 97, 109
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 274
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 3 cut(s) 127, 347, 466
BstMBI GATC 3 cut(s) 124, 344, 463
BstMWI GCNNNNNNNGC 3 cut(s) 15, 70, 79
BstSFI CTRYAG 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 444
BsuTUI ATCGAT 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 297
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 444
CviAII CATG 1 cut(s) 60
CviJI RGCY 5 cut(s) 6, 64, 73, 104, 175
CviKI_1 RGCY 5 cut(s) 6, 64, 73, 104, 175
DdeI CTNAG 1 cut(s) 274
DpnI GATC 3 cut(s) 126, 346, 465
DpnII GATC 3 cut(s) 124, 344, 463
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 115
FaeI CATG 1 cut(s) 63
FaiI YATR 6 cut(s) 53, 61, 93, 252, 383, 395
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 63
HinfI GANTC 2 cut(s) 278, 449
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 277, 344, 463
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 200, 233, 316, 349, 481
HpyCH4III ACNGT 2 cut(s) 97, 109
HpyCH4V TGCA 2 cut(s) 82, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 70, 79
HpyF3I CTNAG 1 cut(s) 274
Hsp92II CATG 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 124, 344, 463
LmnI GCTCC 2 cut(s) 38, 161
LpnPI CCDG 8 cut(s) 30, 50, 132, 234, 276, 281, 327, 480
LweI GCATC 3 cut(s) 50, 65, 266
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 126, 346, 465
MboI GATC 3 cut(s) 124, 344, 463
MboII GAAGA 2 cut(s) 215, 381
MflI RGATCY 1 cut(s) 463
MluCI AATT 2 cut(s) 302, 306
MnlI CCTC 3 cut(s) 80, 350, 432
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 3 cut(s) 305, 333, 411
MwoI GCNNNNNNNGC 3 cut(s) 15, 70, 79
NdeII GATC 3 cut(s) 124, 344, 463
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 116, 117
NmuCI GTSAC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 278, 449
PkrI GCNGC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 305
PsiI TTATAA 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 116, 117
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 463
SaqAI TTAA 3 cut(s) 305, 333, 411
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 3 cut(s) 124, 344, 463
Sau96I GGNCC 1 cut(s) 115
SfaNI GCATC 3 cut(s) 50, 65, 266
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 115
Sse9I AATT 2 cut(s) 302, 306
SsiI CCGC 2 cut(s) 9, 293
TaaI ACNGT 2 cut(s) 97, 109
TaqI TCGA 1 cut(s) 444
TasI AATT 2 cut(s) 302, 306
TfiI GAWTC 2 cut(s) 278, 449
Tru1I TTAA 3 cut(s) 305, 333, 411
Tru9I TTAA 3 cut(s) 305, 333, 411
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 5 cut(s) 40, 167, 239, 270, 462
VpaK11BI GGWCC 1 cut(s) 115
VspI ATTAAT 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.