NAD(P)H-binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g01511 FvH4_7g01562 |
| malus_domestica | MD02G1303100.v1.1 MD02G1303600.v1.1 MD02G1305000.v1.1 MD07G1021100.v1.1 |
| pyrus_communis | pycom03g13000 |
| rosa_chinensis | RchiOBHm_Chr1g0317491 RchiOBHm_Chr1g0317571 RchiOBHm_Chr1g0317671 RchiOBHm_Chr1g0339871 RchiOBHm_Chr1g0350261 RchiOBHm_Chr6g0278881 |
| rosa_laevigata | RLG00000008039 RLG00000018453 |
| rosa_multiflora | Rmu_sc0001037.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00227970 Rroxscaffold_7G00208320 |
| rosa_rugosa | Rorug04G0048200 |
| rosa_samantha | Rh1AG027600 Rh1AG027700 Rh1AG028100 Rh1AG028200 Rh1AG028500 Rh1AG028600 Rh1AG028800 Rh1AG029000 Rh1BG023500 Rh1BG065400 Rh2AG270400 Rh2BG281800 Rh2DG278200 Rh6BG365600 Rh6CG236400 Rh6DG227600 |
| rosa_wichuraiana | Rw0G018780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 329 |
| AccI | GTMKAC | 1 cut(s) | 443 |
| AclWI | GGATC | 1 cut(s) | 298 |
| AgsI | TTSAA | 4 cut(s) | 113, 187, 268, 453 |
| AluBI | AGCT | 4 cut(s) | 6, 436, 464, 473 |
| AluI | AGCT | 4 cut(s) | 6, 436, 464, 473 |
| AlwI | GGATC | 1 cut(s) | 298 |
| AoxI | GGCC | 1 cut(s) | 542 |
| ApeKI | GCWGC | 2 cut(s) | 344, 473 |
| AseI | ATTAAT | 1 cut(s) | 251 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 174 |
| AspS9I | GGNCC | 1 cut(s) | 543 |
| AsuC2I | CCSGG | 1 cut(s) | 529 |
| AsuHPI | GGTGA | 3 cut(s) | 79, 134, 548 |
| BbvCI | CCTCAGC | 1 cut(s) | 465 |
| BbvI | GCAGC | 2 cut(s) | 356, 460 |
| BccI | CCATC | 2 cut(s) | 152, 526 |
| BclI | TGATCA | 1 cut(s) | 124 |
| BcnI | CCSGG | 1 cut(s) | 529 |
| BfmI | CTRYAG | 1 cut(s) | 339 |
| BglII | AGATCT | 1 cut(s) | 409 |
| BisI | GCNGC | 2 cut(s) | 345, 474 |
| BlsI | GCNGC | 2 cut(s) | 346, 475 |
| Bme1390I | CCNGG | 1 cut(s) | 529 |
| BmgT120I | GGNCC | 1 cut(s) | 543 |
| BmrFI | CCNGG | 1 cut(s) | 529 |
| BmsI | GCATC | 1 cut(s) | 50 |
| Bpu10I | CCTNAGC | 1 cut(s) | 465 |
| BpuMI | CCSGG | 1 cut(s) | 529 |
| Bsa29I | ATCGAT | 1 cut(s) | 390 |
| BsaJI | CCNNGG | 1 cut(s) | 286 |
| BseCI | ATCGAT | 1 cut(s) | 390 |
| BseDI | CCNNGG | 1 cut(s) | 286 |
| BseGI | GGATG | 2 cut(s) | 332, 537 |
| BseMII | CTCAG | 1 cut(s) | 456 |
| BseXI | GCAGC | 2 cut(s) | 356, 460 |
| BsgI | GTGCAG | 1 cut(s) | 264 |
| BshFI | GGCC | 1 cut(s) | 544 |
| BshVI | ATCGAT | 1 cut(s) | 390 |
| BsiSI | CCGG | 1 cut(s) | 528 |
| BsnI | GGCC | 1 cut(s) | 544 |
| Bsp143I | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| BspANI | GGCC | 1 cut(s) | 544 |
| BspCNI | CTCAG | 1 cut(s) | 457 |
| BspDI | ATCGAT | 1 cut(s) | 390 |
| BspPI | GGATC | 1 cut(s) | 298 |
| BssECI | CCNNGG | 1 cut(s) | 286 |
| BssMI | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| BssNAI | GTATAC | 1 cut(s) | 444 |
| BssT1I | CCWWGG | 1 cut(s) | 286 |
| Bst1107I | GTATAC | 1 cut(s) | 444 |
| Bst4CI | ACNGT | 2 cut(s) | 97, 109 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 350 |
| BstDEI | CTNAG | 2 cut(s) | 465, 570 |
| BstF5I | GGATG | 2 cut(s) | 332, 537 |
| BstKTI | GATC | 5 cut(s) | 127, 142, 293, 412, 541 |
| BstMBI | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 350, 470 |
| BstSCI | CCNGG | 1 cut(s) | 527 |
| BstSFI | CTRYAG | 1 cut(s) | 339 |
| BstV1I | GCAGC | 2 cut(s) | 356, 460 |
| BstX2I | RGATCY | 1 cut(s) | 409 |
| BstYI | RGATCY | 1 cut(s) | 409 |
| BstZ17I | GTATAC | 1 cut(s) | 444 |
| Bsu15I | ATCGAT | 1 cut(s) | 390 |
| BsuRI | GGCC | 1 cut(s) | 544 |
| BsuTUI | ATCGAT | 1 cut(s) | 390 |
| BtsCI | GGATG | 2 cut(s) | 332, 537 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| Cfr13I | GGNCC | 1 cut(s) | 543 |
| ClaI | ATCGAT | 1 cut(s) | 390 |
| CseI | GACGC | 1 cut(s) | 45 |
| CviAII | CATG | 1 cut(s) | 60 |
| CviJI | RGCY | 9 cut(s) | 6, 64, 104, 175, 436, 464, 473, 544, 557 |
| CviKI_1 | RGCY | 9 cut(s) | 6, 64, 104, 175, 436, 464, 473, 544, 557 |
| DdeI | CTNAG | 2 cut(s) | 465, 570 |
| DpnI | GATC | 5 cut(s) | 126, 141, 292, 411, 540 |
| DpnII | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| Eco130I | CCWWGG | 1 cut(s) | 286 |
| EcoT14I | CCWWGG | 1 cut(s) | 286 |
| ErhI | CCWWGG | 1 cut(s) | 286 |
| FaeI | CATG | 1 cut(s) | 63 |
| FaiI | YATR | 7 cut(s) | 53, 61, 329, 341, 444, 512, 514 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 420, 452 |
| FatI | CATG | 1 cut(s) | 59 |
| FbaI | TGATCA | 1 cut(s) | 124 |
| FblI | GTMKAC | 1 cut(s) | 443 |
| Fnu4HI | GCNGC | 2 cut(s) | 345, 474 |
| FokI | GGATG | 2 cut(s) | 319, 544 |
| Fsp4HI | GCNGC | 2 cut(s) | 345, 474 |
| GluI | GCNGC | 2 cut(s) | 345, 474 |
| HaeIII | GGCC | 1 cut(s) | 544 |
| HapII | CCGG | 1 cut(s) | 528 |
| HgaI | GACGC | 1 cut(s) | 45 |
| Hin1II | CATG | 1 cut(s) | 63 |
| HindIII | AAGCTT | 1 cut(s) | 434 |
| HinfI | GANTC | 1 cut(s) | 395 |
| HpaII | CCGG | 1 cut(s) | 528 |
| HphI | GGTGA | 3 cut(s) | 79, 134, 548 |
| Hpy166II | GTNNAC | 1 cut(s) | 444 |
| Hpy188I | TCNGA | 2 cut(s) | 409, 565 |
| Hpy188III | TCNNGA | 1 cut(s) | 113 |
| Hpy8I | GTNNAC | 1 cut(s) | 444 |
| HpyAV | CCTTC | 4 cut(s) | 200, 233, 262, 295 |
| HpyCH4III | ACNGT | 2 cut(s) | 97, 109 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 245, 353, 488 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 350, 470 |
| HpyF3I | CTNAG | 2 cut(s) | 465, 570 |
| Hsp92II | CATG | 1 cut(s) | 63 |
| Ksp22I | TGATCA | 1 cut(s) | 124 |
| Kzo9I | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| LmnI | GCTCC | 2 cut(s) | 38, 161 |
| LpnPI | CCDG | 6 cut(s) | 21, 30, 50, 234, 273, 541 |
| Lsp1109I | GCAGC | 2 cut(s) | 356, 460 |
| LweI | GCATC | 1 cut(s) | 50 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 5 cut(s) | 126, 141, 292, 411, 540 |
| MboI | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| MboII | GAAGA | 2 cut(s) | 82, 215 |
| MflI | RGATCY | 1 cut(s) | 409 |
| MluCI | AATT | 3 cut(s) | 248, 252, 501 |
| MnlI | CCTC | 5 cut(s) | 80, 346, 378, 460, 556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 174 |
| MseI | TTAA | 3 cut(s) | 251, 279, 357 |
| MspI | CCGG | 1 cut(s) | 528 |
| MspR9I | CCNGG | 1 cut(s) | 529 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 350, 470 |
| NciI | CCSGG | 1 cut(s) | 529 |
| NdeII | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| NlaIII | CATG | 1 cut(s) | 63 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| PdmI | GAANNNNTTC | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 395 |
| PflFI | GACNNNGTC | 1 cut(s) | 221 |
| PfoI | TCCNGGA | 1 cut(s) | 527 |
| PkrI | GCNGC | 2 cut(s) | 346, 475 |
| PshBI | ATTAAT | 1 cut(s) | 251 |
| PsiI | TTATAA | 1 cut(s) | 329 |
| PspPI | GGNCC | 1 cut(s) | 543 |
| PsuI | RGATCY | 1 cut(s) | 409 |
| PsyI | GACNNNGTC | 1 cut(s) | 221 |
| SaqAI | TTAA | 3 cut(s) | 251, 279, 357 |
| SatI | GCNGC | 2 cut(s) | 345, 474 |
| Sau3AI | GATC | 5 cut(s) | 124, 139, 290, 409, 538 |
| Sau96I | GGNCC | 1 cut(s) | 543 |
| ScrFI | CCNGG | 1 cut(s) | 529 |
| SfaNI | GCATC | 1 cut(s) | 50 |
| SfcI | CTRYAG | 1 cut(s) | 339 |
| Sse9I | AATT | 3 cut(s) | 248, 252, 501 |
| StyD4I | CCNGG | 1 cut(s) | 527 |
| StyI | CCWWGG | 1 cut(s) | 286 |
| TaaI | ACNGT | 2 cut(s) | 97, 109 |
| TaqI | TCGA | 1 cut(s) | 390 |
| TasI | AATT | 3 cut(s) | 248, 252, 501 |
| TfiI | GAWTC | 1 cut(s) | 395 |
| Tru1I | TTAA | 3 cut(s) | 251, 279, 357 |
| Tru9I | TTAA | 3 cut(s) | 251, 279, 357 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| TseI | GCWGC | 2 cut(s) | 344, 473 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 3 cut(s) | 40, 167, 408 |
| TspRI | CASTG | 1 cut(s) | 112 |
| Tth111I | GACNNNGTC | 1 cut(s) | 221 |
| VspI | ATTAAT | 1 cut(s) | 251 |
| XmiI | GTMKAC | 1 cut(s) | 443 |
| XmnI | GAANNNNTTC | 1 cut(s) | 174 |