Transcription elongation factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g01511 FvH4_7g01562 |
| malus_domestica | MD02G1303100.v1.1 MD02G1303600.v1.1 MD02G1305000.v1.1 MD07G1021100.v1.1 |
| pyrus_communis | pycom03g13000 |
| rosa_chinensis | RchiOBHm_Chr1g0317491 RchiOBHm_Chr1g0317571 RchiOBHm_Chr1g0317671 RchiOBHm_Chr1g0339871 RchiOBHm_Chr1g0350261 RchiOBHm_Chr6g0278881 |
| rosa_laevigata | RLG00000008039 RLG00000018453 |
| rosa_multiflora | Rmu_sc0001037.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00227970 Rroxscaffold_7G00208320 |
| rosa_rugosa | Rorug04G0048200 |
| rosa_samantha | Rh1AG027600 Rh1AG027700 Rh1AG028100 Rh1AG028200 Rh1AG028500 Rh1AG028600 Rh1AG028800 Rh1AG029000 Rh1BG023500 Rh1BG065400 Rh2AG270400 Rh2BG281800 Rh2DG278200 Rh6BG365600 Rh6CG236400 Rh6DG227600 |
| rosa_wichuraiana | Rw0G018780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 85, 146, 338 |
| AcsI | RAATTY | 1 cut(s) | 224 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 39 |
| AgsI | TTSAA | 3 cut(s) | 47, 55, 284 |
| AluBI | AGCT | 1 cut(s) | 110 |
| AluI | AGCT | 1 cut(s) | 110 |
| AlwI | GGATC | 3 cut(s) | 85, 146, 338 |
| ApoI | RAATTY | 1 cut(s) | 224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| BccI | CCATC | 2 cut(s) | 92, 209 |
| BfaI | CTAG | 1 cut(s) | 355 |
| BmrI | ACTGGG | 1 cut(s) | 141 |
| BmsI | GCATC | 1 cut(s) | 19 |
| BmuI | ACTGGG | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 1 cut(s) | 347 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 39 |
| Bse1I | ACTGG | 3 cut(s) | 72, 147, 262 |
| BseGI | GGATG | 3 cut(s) | 125, 214, 220 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 39 |
| BseNI | ACTGG | 3 cut(s) | 72, 147, 262 |
| BseRI | GAGGAG | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 39 |
| Bsp143I | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| BspPI | GGATC | 3 cut(s) | 85, 146, 338 |
| BsrI | ACTGG | 3 cut(s) | 72, 147, 262 |
| BssMI | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| Bst4CI | ACNGT | 1 cut(s) | 159 |
| BstDEI | CTNAG | 1 cut(s) | 91 |
| BstF5I | GGATG | 3 cut(s) | 125, 214, 220 |
| BstKTI | GATC | 5 cut(s) | 12, 80, 154, 192, 346 |
| BstMBI | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 29 |
| BstX2I | RGATCY | 2 cut(s) | 77, 343 |
| BstYI | RGATCY | 2 cut(s) | 77, 343 |
| BtsCI | GGATG | 3 cut(s) | 125, 214, 220 |
| BtsIMutI | CAGTG | 1 cut(s) | 154 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 219, 254 |
| CviJI | RGCY | 4 cut(s) | 5, 43, 110, 331 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 43, 110, 331 |
| DdeI | CTNAG | 1 cut(s) | 91 |
| DpnI | GATC | 5 cut(s) | 11, 79, 153, 191, 345 |
| DpnII | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| FaiI | YATR | 6 cut(s) | 21, 120, 198, 270, 279, 294 |
| FokI | GGATG | 3 cut(s) | 112, 221, 227 |
| FspBI | CTAG | 1 cut(s) | 355 |
| HinfI | GANTC | 1 cut(s) | 86 |
| HpyAV | CCTTC | 2 cut(s) | 68, 342 |
| HpyCH4III | ACNGT | 1 cut(s) | 159 |
| HpyCH4V | TGCA | 1 cut(s) | 230 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 29 |
| HpyF3I | CTNAG | 1 cut(s) | 91 |
| Kzo9I | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| LpnPI | CCDG | 4 cut(s) | 53, 160, 238, 243 |
| LweI | GCATC | 1 cut(s) | 19 |
| MaeI | CTAG | 1 cut(s) | 355 |
| MaeIII | GTNAC | 1 cut(s) | 271 |
| MalI | GATC | 5 cut(s) | 11, 79, 153, 191, 345 |
| MboI | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| MboII | GAAGA | 4 cut(s) | 83, 233, 254, 296 |
| MfeI | CAATTG | 1 cut(s) | 47 |
| MflI | RGATCY | 2 cut(s) | 77, 343 |
| MluCI | AATT | 4 cut(s) | 47, 224, 289, 318 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 2 cut(s) | 196, 199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MunI | CAATTG | 1 cut(s) | 47 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 29 |
| NdeII | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 86 |
| PsuI | RGATCY | 2 cut(s) | 77, 343 |
| Sau3AI | GATC | 5 cut(s) | 9, 77, 151, 189, 343 |
| SetI | ASST | 5 cut(s) | 66, 112, 269, 278, 308 |
| SfaNI | GCATC | 1 cut(s) | 19 |
| SgeI | CNNG | 6 cut(s) | 80, 159, 243, 265, 270, 338 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 4 cut(s) | 47, 224, 289, 318 |
| SspMI | CTAG | 1 cut(s) | 355 |
| TaaI | ACNGT | 1 cut(s) | 159 |
| TaqI | TCGA | 2 cut(s) | 8, 308 |
| TasI | AATT | 4 cut(s) | 47, 224, 289, 318 |
| TfiI | GAWTC | 1 cut(s) | 86 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TspDTI | ATGAA | 4 cut(s) | 107, 185, 309, 330 |
| TspRI | CASTG | 1 cut(s) | 154 |
| XapI | RAATTY | 1 cut(s) | 224 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| XspI | CTAG | 1 cut(s) | 355 |