Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003476

Physical Location & Seq

Genomic Coordinates Reverse (-)

24776463 .. 24777626

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008039

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTTTGGTACCCAGAGAAACCTCGTGGTTTGGATATTACCAAGATGTGCCTTCAACTCAATTCTAGGTCCACAGCAGGTAATAATACAATTAATATCGTTAAAACTGATCTGTACATTAAAGACTGGATTGGTTTGAGAATATTGCATGAAGCTGGAAGGGTTAAATACATTAGCGTTTCAGGAGGTCATCTTGGAATCTCCCAAAGTGATATGAAGAAGCATGTGGCCATGGCTCCTCGGTCTAACAACACAGTCAAAGCTAAAGCAATAGCACTAAGGATGAAGGCACTGCAAATGAAAAGAAGTAAAGAAACAGTGTCGAAACTAGCTGTTGAAGAGATTGATGCACCACCTAAATCTGCCTTCACCAAACATGATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

129

Amino Acids

14.36

Weight (kDa)

10.0

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	28 - 64	1.2e-06	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01511 FvH4_7g01562
malus_domestica	MD02G1303100.v1.1 MD02G1303600.v1.1 MD02G1305000.v1.1 MD07G1021100.v1.1
pyrus_communis	pycom03g13000
rosa_chinensis	RchiOBHm_Chr1g0317491 RchiOBHm_Chr1g0317571 RchiOBHm_Chr1g0317671 RchiOBHm_Chr1g0339871 RchiOBHm_Chr1g0350261 RchiOBHm_Chr6g0278881
rosa_laevigata	RLG00000008039 RLG00000018453
rosa_multiflora	Rmu_sc0001037.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227970 Rroxscaffold_7G00208320
rosa_rugosa	Rorug04G0048200
rosa_samantha	Rh1AG027600 Rh1AG027700 Rh1AG028100 Rh1AG028200 Rh1AG028500 Rh1AG028600 Rh1AG028800 Rh1AG029000 Rh1BG023500 Rh1BG065400 Rh2AG270400 Rh2BG281800 Rh2DG278200 Rh6BG365600 Rh6CG236400 Rh6DG227600
rosa_wichuraiana	Rw0G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	2 cut(s)	11, 116
AgsI	TTSAA	2 cut(s)	56, 338
AluBI	AGCT	3 cut(s)	155, 263, 332
AluI	AGCT	3 cut(s)	155, 263, 332
AoxI	GGCC	1 cut(s)	228
AseI	ATTAAT	1 cut(s)	93
Asp718I	GGTACC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	379
BfaI	CTAG	2 cut(s)	66, 329
BfuAI	ACCTGC	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	11, 237
BmsI	GCATC	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	231, 239
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	231, 239
BseGI	GGATG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	109, 379
Bsp19I	CCATGG	1 cut(s)	231
BspANI	GGCC	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	11, 237
BspMI	ACCTGC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	231, 239
BssMI	GATC	2 cut(s)	109, 379
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	256, 319
Bst6I	CTCTTC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	112, 382
BstMBI	GATC	2 cut(s)	109, 379
BstNSI	RCATGY	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	288
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	290, 324
BveI	ACCTGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	10, 115
CviAII	CATG	4 cut(s)	149, 224, 232, 377
CviJI	RGCY	5 cut(s)	155, 230, 236, 263, 332
CviKI_1	RGCY	5 cut(s)	155, 230, 236, 263, 332
CviQI	GTAC	2 cut(s)	10, 115
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	2 cut(s)	111, 381
DpnII	GATC	2 cut(s)	109, 379
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	4 cut(s)	152, 227, 235, 380
FaiI	YATR	5 cut(s)	150, 215, 225, 233, 378
FatI	CATG	4 cut(s)	148, 223, 231, 376
FbaI	TGATCA	1 cut(s)	379
FokI	GGATG	1 cut(s)	295
FspBI	CTAG	2 cut(s)	66, 329
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	152, 227, 235, 380
HinfI	GANTC	1 cut(s)	198
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	4 cut(s)	62, 153, 280, 376
HpyCH4III	ACNGT	2 cut(s)	256, 319
HpyCH4V	TGCA	3 cut(s)	148, 295, 350
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	152, 227, 235, 380
KpnI	GGTACC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	109, 379
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	5 cut(s)	27, 63, 112, 141, 168
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	66, 329
MalI	GATC	2 cut(s)	111, 381
MboI	GATC	2 cut(s)	109, 379
MboII	GAAGA	2 cut(s)	229, 350
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	2 cut(s)	61, 90
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	3 cut(s)	33, 179, 249
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	4 cut(s)	93, 102, 120, 165
Msp20I	TGGCCA	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	109, 379
NlaIII	CATG	4 cut(s)	152, 227, 235, 380
NlaIV	GGNNCC	2 cut(s)	11, 237
NspI	RCATGY	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	11, 237
PspPI	GGNCC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	11, 116
RsaNI	GTAC	2 cut(s)	10, 115
SaqAI	TTAA	4 cut(s)	93, 102, 120, 165
Sau3AI	GATC	2 cut(s)	109, 379
Sau96I	GGNCC	1 cut(s)	69
SetI	ASST	8 cut(s)	25, 71, 82, 157, 190, 265, 334, 358
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	69
Sse9I	AATT	2 cut(s)	61, 90
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	2 cut(s)	66, 329
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	256, 319
TaqI	TCGA	1 cut(s)	323
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	61, 90
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	4 cut(s)	93, 102, 120, 165
Tru9I	TTAA	4 cut(s)	93, 102, 120, 165
TscAI	CASTG	2 cut(s)	297, 324
TspDTI	ATGAA	4 cut(s)	165, 230, 299, 314
TspRI	CASTG	2 cut(s)	297, 324
VpaK11BI	GGWCC	1 cut(s)	69
VspI	ATTAAT	1 cut(s)	93
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	2 cut(s)	66, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.