Rh2DG278200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003476
Physical Location & Seq
Reverse (-)
31470080 .. 31471263
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG278200.1

Sequence Viewer

Length: 312 bp
ATGGTTAAAGGCGGTGGTGATGACGAGGACGAGGAAGAGGACGACAACGGGTATGGTCTTGATGATGAGCTGGTGCCGTGGTCGGTGAGCGAAGACACTGACCTTCACCGCGGCCTTCTCCGCGTTCGGCGATCCAATTCCTTGGCTCATCGGCCCAGCCTTCTTCTTCTCCGACAAGCTGCTAATGCTAGAAAAATTCTGAAAGGAGAGAGGTTTAAGATGACAATATACAAACTGGATAGTGGGAATGTAAACATCTGCAAGCAGTTCAAGTTATTCCATTCAGGTCTTGCTCTCAGCCAGAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

6.28

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 2 cut(s) 111, 123
AciI CCGC 4 cut(s) 12, 109, 111, 121
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 195
AgsI TTSAA 1 cut(s) 271
AluBI AGCT 2 cut(s) 70, 179
AluI AGCT 2 cut(s) 70, 179
AlwI GGATC 1 cut(s) 126
AoxI GGCC 2 cut(s) 112, 152
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 29, 97, 98
BanI GGYRCC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 61
BfaI CTAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 112, 180
BlsI GCNGC 2 cut(s) 113, 181
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 77, 109, 141
Bse1I ACTGG 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 77, 109, 141
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 2 cut(s) 111, 123
BshFI GGCC 2 cut(s) 114, 154
BshNI GGYRCC 1 cut(s) 73
BsnI GGCC 2 cut(s) 114, 154
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 4 cut(s) 12, 109, 111, 121
BspANI GGCC 2 cut(s) 114, 154
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 2 cut(s) 111, 123
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 77, 109, 141
BssMI GATC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 296
BstDSI CCRYGG 2 cut(s) 77, 109
BstFNI CGCG 2 cut(s) 111, 123
BstKTI GATC 1 cut(s) 134
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 2 cut(s) 120, 185
BstUI CGCG 2 cut(s) 111, 123
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 114, 154
BtgI CCRYGG 2 cut(s) 77, 109
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 153
Cfr42I CCGCGG 1 cut(s) 112
CviJI RGCY 7 cut(s) 70, 114, 146, 154, 159, 179, 300
CviKI_1 RGCY 7 cut(s) 70, 114, 146, 154, 159, 179, 300
DdeI CTNAG 1 cut(s) 296
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaiI YATR 2 cut(s) 54, 229
Fnu4HI GCNGC 2 cut(s) 112, 180
Fsp4HI GCNGC 2 cut(s) 112, 180
FspBI CTAG 1 cut(s) 189
GluI GCNGC 2 cut(s) 112, 180
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 114, 154
HphI GGTGA 3 cut(s) 29, 97, 98
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 173, 201
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 3 cut(s) 113, 125, 170
HpyCH4V TGCA 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 185
HpyF3I CTNAG 1 cut(s) 296
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 56, 169, 221, 270
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 1 cut(s) 189
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 4 cut(s) 47, 104, 155, 158
MluCI AATT 3 cut(s) 136, 195, 305
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 4 cut(s) 19, 25, 31, 204
MseI TTAA 2 cut(s) 6, 216
MspA1I CMGCKG 1 cut(s) 111
MvnI CGCG 2 cut(s) 111, 123
MwoI GCNNNNNNNGC 2 cut(s) 120, 185
NdeII GATC 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 113, 181
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 153
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 6, 216
SatI GCNGC 2 cut(s) 112, 180
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 153
SetI ASST 5 cut(s) 72, 105, 181, 215, 289
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
Sse9I AATT 3 cut(s) 136, 195, 305
SsiI CCGC 4 cut(s) 12, 109, 111, 121
SspMI CTAG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 141
TasI AATT 3 cut(s) 136, 195, 305
TauI GCSGC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 6, 216
Tru9I TTAA 2 cut(s) 6, 216
TscAI CASTG 1 cut(s) 103
TseI GCWGC 1 cut(s) 179
TspRI CASTG 1 cut(s) 103
XapI RAATTY 1 cut(s) 195
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.