Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00847

Orthogroup ID

OG0003476

Physical Location & Seq

Genomic Coordinates Reverse (-)

139777 .. 142926

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAAGTGGAGAAGGGTCCAGTTTGTGTAACAGGTGGAACTGCATGGCTGGTTATGAAGCTACTCCAAAATGGTTACACTGTTCGAACAACTGTTAGACCTGATCCAGCTGCTAATGCTAGAAAAATTCTGAAAAGAGAGAGGTTTAAGATGACAATATACAAACCGGAGGGTGGGAATGTAAACATCTGCAAGCAGTTCAAGTTATACCATCCAGGTCTGGCTTTCAGCCAGAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

80

Amino Acids

9.04

Weight (kDa)

10.02

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01511 FvH4_7g01562
malus_domestica	MD02G1303100.v1.1 MD02G1303600.v1.1 MD02G1305000.v1.1 MD07G1021100.v1.1
pyrus_communis	pycom03g13000
rosa_chinensis	RchiOBHm_Chr1g0317491 RchiOBHm_Chr1g0317571 RchiOBHm_Chr1g0317671 RchiOBHm_Chr1g0339871 RchiOBHm_Chr1g0350261 RchiOBHm_Chr6g0278881
rosa_laevigata	RLG00000008039 RLG00000018453
rosa_multiflora	Rmu_sc0001037.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227970 Rroxscaffold_7G00208320
rosa_rugosa	Rorug04G0048200
rosa_samantha	Rh1AG027600 Rh1AG027700 Rh1AG028100 Rh1AG028200 Rh1AG028500 Rh1AG028600 Rh1AG028800 Rh1AG029000 Rh1BG023500 Rh1BG065400 Rh2AG270400 Rh2BG281800 Rh2DG278200 Rh6BG365600 Rh6CG236400 Rh6DG227600
rosa_wichuraiana	Rw0G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	61, 110
AluI	AGCT	2 cut(s)	61, 110
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	82, 94
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	17
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	5 cut(s)	49, 61, 110, 224, 231
CviKI_1	RGCY	5 cut(s)	49, 61, 110, 224, 231
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	48
FaiI	YATR	4 cut(s)	46, 56, 160, 208
FatI	CATG	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	111
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	1 cut(s)	48
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	82, 94
HpyCH4V	TGCA	2 cut(s)	44, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	18, 33, 35, 114, 120, 180, 201, 206, 228
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	28, 74
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MluCI	AATT	2 cut(s)	126, 236
MnlI	CCTC	2 cut(s)	135, 163
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	6 cut(s)	37, 63, 103, 112, 146, 220
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	126, 236
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	82, 94
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	126, 236
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	126
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.