Rh1AG027600

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003476
Physical Location & Seq
Reverse (-)
4992856 .. 4999556
6701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG027600.1

Sequence Viewer

Length: 1062 bp
ATGGGCGGAGAGAGGAAGGTTGTGTGTGTTACAGGAGCTTCTGGTTTCATAGCTTCATGGTTGGTGAAGATTTTGTTACAGCGAGGTTATGTCGTCAAAGCCACCGTTCGTGACCCAAATGATCCAAAGAAAACAGAACACTTGCTCTCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGAATTGTTAGAAGAGGGGTCTTTTGACCTTGTAGTTGATGGATGTGAAGGTGTTTTCCATACAGCATCTCCGGTACTATTTTCATCGATCAGTGACCCACAGGCAGAACTGATTGATCCTGCAGTAAAGGGAACGCTTAATGTTCTTAAATCATGCGTGAAATTTCCAACAATCAAGAGGGTAGTTTTAACATCTTCCATGGCTGCAGTTATTATCAATGGAAGACCTTTAACCTCTAATGTAGAAGTTGATGAAACATGGTTTTCTGATCCACTTGTTTGTGAGGAGTTGAAGATGAGTGGAGAAAGGAAGGTTGTGTGTGTTACAGGAGCTTCTGGTTTCATAGCTTCATGGCTGGTGAAGCTCTTGTTACAGCGAGGTTATGTCGTCAAAGCCACCGTTCGTGACCCAAATAATCCGAAGAAAACAGAACACTTGCTCTCACTAGAGGGAGCAGAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTAGAAGAGGGATCTTTTGACCTTGTAGTTGATGGATGTGAAGGTGTTTTCCACACAGCATCTCCGGTACTATTTTCATCGATCAGCGACCCACAGGCAGAACTGATTGATCCTGCAGTAAAGGGAACGCTTAATGTTCTTAAATCGTGCGTGAAATTTCCAACAATCAAGAGGGTAGTTTTAACATCTTCCATGGCGGCAGTTGTACTCAATGGAACACCTCTAACCTCTAATGTGGTAGTTGATGAAACATGGTTTTCTGATCCACTTCTTTGTCAGGAGTTGAAGGTTTTGTATCAGTATAACTCATCGAATCGAGTTCAAGGAAAACTCAAGTTAGAAGATCACATTAGTCAGCAAATAAATCTAAATCATAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

353

Amino Acids

38.6

Weight (kDa)

6.1

Isoelectric Point (pI)

24.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 5 - 105 2e-07 NmrA-like family
Epimerase PF01370 8 - 131 6.8e-12 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 136 5.3e-12 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 129 9.3e-09 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 134 2.2e-06 Male sterility protein
NAD_binding_10 PF13460 12 - 132 1.9e-07 NAD(P)H-binding
NmrA PF05368 166 - 266 5e-08 NmrA-like family
Epimerase PF01370 169 - 292 1.7e-13 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 171 - 297 3.4e-13 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 171 - 290 1.9e-10 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 171 - 297 1.1e-07 Male sterility protein
NAD_binding_10 PF13460 173 - 293 2.1e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 6, 875
AclWI GGATC 6 cut(s) 116, 299, 452, 697, 782, 935
AcsI RAATTY 2 cut(s) 350, 833
AfaI GTAC 3 cut(s) 264, 747, 885
AgsI TTSAA 5 cut(s) 184, 481, 667, 964, 1001
AluBI AGCT 6 cut(s) 38, 53, 521, 536, 553, 1058
AluI AGCT 6 cut(s) 38, 53, 521, 536, 553, 1058
AlwI GGATC 6 cut(s) 116, 299, 452, 697, 782, 935
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 2 cut(s) 350, 833
Asp700I GAANNNNTTC 2 cut(s) 171, 654
AsuHPI GGTGA 2 cut(s) 76, 559
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 149, 221, 704
BfaI CTAG 1 cut(s) 635
BfmI CTRYAG 3 cut(s) 309, 393, 792
BisI GCNGC 2 cut(s) 393, 876
BlsI GCNGC 2 cut(s) 394, 877
BmsI GCATC 2 cut(s) 263, 746
BpiI GAAGAC 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 995
Bsa29I ATCGAT 2 cut(s) 275, 758
BsaJI CCNNGG 2 cut(s) 387, 870
BsaWI WCCGGW 2 cut(s) 259, 742
BsaXI ACNNNNNCTCC 4 cut(s) 241, 271, 724, 754
BseCI ATCGAT 2 cut(s) 275, 758
BseDI CCNNGG 2 cut(s) 387, 870
BseGI GGATG 2 cut(s) 236, 719
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 1 cut(s) 379
BshVI ATCGAT 2 cut(s) 275, 758
BsiSI CCGG 2 cut(s) 260, 743
Bsp143I GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
Bsp19I CCATGG 2 cut(s) 387, 870
BspACI CCGC 2 cut(s) 6, 875
BspDI ATCGAT 2 cut(s) 275, 758
BspMAI CTGCAG 3 cut(s) 313, 397, 796
BspPI GGATC 6 cut(s) 116, 299, 452, 697, 782, 935
BssECI CCNNGG 2 cut(s) 387, 870
BssMI GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
BssT1I CCWWGG 2 cut(s) 387, 870
Bst4CI ACNGT 2 cut(s) 106, 589
Bst6I CTCTTC 2 cut(s) 195, 678
BstDSI CCRYGG 2 cut(s) 387, 870
BstF5I GGATG 2 cut(s) 236, 719
BstKTI GATC 9 cut(s) 124, 279, 307, 460, 692, 762, 790, 943, 1024
BstMBI GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstSFI CTRYAG 3 cut(s) 309, 393, 792
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 689
BstYI RGATCY 1 cut(s) 689
Bsu15I ATCGAT 2 cut(s) 275, 758
BsuTUI ATCGAT 2 cut(s) 275, 758
BtgI CCRYGG 2 cut(s) 387, 870
BtsCI GGATG 2 cut(s) 236, 719
BtsIMutI CAGTG 1 cut(s) 286
ClaI ATCGAT 2 cut(s) 275, 758
Csp6I GTAC 3 cut(s) 263, 746, 884
CviAII CATG 7 cut(s) 57, 342, 388, 447, 540, 871, 930
CviQI GTAC 3 cut(s) 263, 746, 884
DpnI GATC 9 cut(s) 123, 278, 306, 459, 691, 761, 789, 942, 1023
DpnII GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
Eam1104I CTCTTC 2 cut(s) 195, 678
EarI CTCTTC 2 cut(s) 195, 678
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 387, 870
EcoT14I CCWWGG 2 cut(s) 387, 870
ErhI CCWWGG 2 cut(s) 387, 870
FaeI CATG 7 cut(s) 60, 345, 391, 450, 543, 874, 933
FatI CATG 7 cut(s) 56, 341, 387, 446, 539, 870, 929
Fnu4HI GCNGC 2 cut(s) 393, 876
FokI GGATG 2 cut(s) 243, 726
Fsp4HI GCNGC 2 cut(s) 393, 876
FspBI CTAG 1 cut(s) 635
GluI GCNGC 2 cut(s) 393, 876
HapII CCGG 2 cut(s) 260, 743
Hin1II CATG 7 cut(s) 60, 345, 391, 450, 543, 874, 933
HindIII AAGCTT 1 cut(s) 1056
HinfI GANTC 1 cut(s) 991
HpaII CCGG 2 cut(s) 260, 743
HphI GGTGA 2 cut(s) 76, 559
Hpy188I TCNGA 3 cut(s) 457, 609, 940
Hpy188III TCNNGA 5 cut(s) 110, 364, 593, 847, 956
HpyAV CCTTC 5 cut(s) 10, 230, 493, 713, 958
HpyCH4III ACNGT 2 cut(s) 106, 589
HpyCH4V TGCA 3 cut(s) 311, 395, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
Hsp92II CATG 7 cut(s) 60, 345, 391, 450, 543, 874, 933
Kzo9I GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
LmnI GCTCC 4 cut(s) 35, 158, 518, 641
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 263, 746
MaeI CTAG 1 cut(s) 635
MaeIII GTNAC 7 cut(s) 28, 75, 110, 281, 511, 558, 593
MalI GATC 9 cut(s) 123, 278, 306, 459, 691, 761, 789, 942, 1023
MboI GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
MboII GAAGA 9 cut(s) 79, 212, 375, 423, 493, 622, 695, 858, 1031
MflI RGATCY 1 cut(s) 689
MluCI AATT 3 cut(s) 191, 350, 833
MmeI TCCRAC 2 cut(s) 380, 863
MroXI GAANNNNTTC 2 cut(s) 171, 654
MseI TTAA 7 cut(s) 327, 336, 377, 419, 810, 819, 860
MspI CCGG 2 cut(s) 260, 743
MwoI GCNNNNNNNGC 1 cut(s) 550
NcoI CCATGG 2 cut(s) 387, 870
NdeII GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
NlaIII CATG 7 cut(s) 60, 345, 391, 450, 543, 874, 933
NmuCI GTSAC 3 cut(s) 110, 281, 593
PdmI GAANNNNTTC 2 cut(s) 171, 654
PfeI GAWTC 1 cut(s) 991
PkrI GCNGC 2 cut(s) 394, 877
PstI CTGCAG 3 cut(s) 313, 397, 796
PsuI RGATCY 1 cut(s) 689
RsaI GTAC 3 cut(s) 264, 747, 885
RsaNI GTAC 3 cut(s) 263, 746, 884
SaqAI TTAA 7 cut(s) 327, 336, 377, 419, 810, 819, 860
SatI GCNGC 2 cut(s) 393, 876
Sau3AI GATC 9 cut(s) 121, 276, 304, 457, 689, 759, 787, 940, 1021
SfaNI GCATC 2 cut(s) 263, 746
SfcI CTRYAG 3 cut(s) 309, 393, 792
SmlI CTYRAG 1 cut(s) 1010
SmoI CTYRAG 1 cut(s) 1010
Sse9I AATT 3 cut(s) 191, 350, 833
SsiI CCGC 2 cut(s) 6, 875
SspMI CTAG 1 cut(s) 635
StyI CCWWGG 2 cut(s) 387, 870
TaaI ACNGT 2 cut(s) 106, 589
TaqI TCGA 4 cut(s) 275, 758, 989, 994
TasI AATT 3 cut(s) 191, 350, 833
TatI WGTACW 1 cut(s) 883
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 1 cut(s) 991
Tru1I TTAA 7 cut(s) 327, 336, 377, 419, 810, 819, 860
Tru9I TTAA 7 cut(s) 327, 336, 377, 419, 810, 819, 860
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 3 cut(s) 110, 281, 593
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 3 cut(s) 110, 281, 593
TspRI CASTG 1 cut(s) 286
XapI RAATTY 2 cut(s) 350, 833
XmnI GAANNNNTTC 2 cut(s) 171, 654
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.