Rh1AG028100

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003476
Physical Location & Seq
Reverse (-)
5085324 .. 5086163
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG028100.1

Sequence Viewer

Length: 447 bp
ATGAGCTGTGGAGAAAGCAAGGTTGTGTGTGTGACAGGAGCATCTGGTTTCATAGCGTCATGGCTGGTGAAGATTTTATTGCAAAGAGGTTTTACTGTCAAAGCCACTGTTCAAGACCCAAATGATCAAAAGAAAATAGATCACCTACTCTCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAAACTTGTTAGAAGAAGGTTCTTTTGACCCTGTCGTTGATGAGTGTGAAGGTGCAGAATTAATTGACCCTGCTTTGAAGGGAACGCTTAATGTCCTTGGATCGTGTGTGAAGGTTCAGTCTATCAAAAGGGTGGTTATAACATCCTCTATAGCAGCAGTTGCATTTAATGGAAAACCTCTTACTGCTGATGTAATAATCGATGAATCTTGGTTTTCAGATCTTGCTTTTTGTGAAAAAGTGAAGGTTAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

148

Amino Acids

15.92

Weight (kDa)

5.38

Isoelectric Point (pI)

24.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDP_Man_Dehyd PF16363 11 - 83 2.1e-07 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AclWI GGATC 1 cut(s) 298
AgsI TTSAA 3 cut(s) 113, 187, 268
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
AlwI GGATC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 344
AseI ATTAAT 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 79, 134
BbvI GCAGC 1 cut(s) 356
BccI CCATC 1 cut(s) 152
BclI TGATCA 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 339
BglII AGATCT 1 cut(s) 409
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmsI GCATC 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 390
Bsp143I GATC 4 cut(s) 124, 139, 290, 409
BspDI ATCGAT 1 cut(s) 390
BspPI GGATC 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 4 cut(s) 124, 139, 290, 409
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 97, 109
BstAPI GCANNNNNTGC 1 cut(s) 350
BstF5I GGATG 1 cut(s) 332
BstKTI GATC 4 cut(s) 127, 142, 293, 412
BstMBI GATC 4 cut(s) 124, 139, 290, 409
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
Bsu15I ATCGAT 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 105
ClaI ATCGAT 1 cut(s) 390
CseI GACGC 1 cut(s) 45
CviAII CATG 1 cut(s) 60
CviJI RGCY 4 cut(s) 6, 64, 104, 175
CviKI_1 RGCY 4 cut(s) 6, 64, 104, 175
DpnI GATC 4 cut(s) 126, 141, 292, 411
DpnII GATC 4 cut(s) 124, 139, 290, 409
Eco130I CCWWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 63
FaiI YATR 4 cut(s) 53, 61, 329, 341
FatI CATG 1 cut(s) 59
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 345
HgaI GACGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 63
HinfI GANTC 1 cut(s) 395
HphI GGTGA 2 cut(s) 79, 134
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 200, 233, 262, 295, 427
HpyCH4III ACNGT 2 cut(s) 97, 109
HpyCH4V TGCA 3 cut(s) 82, 245, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 124, 139, 290, 409
LmnI GCTCC 2 cut(s) 38, 161
LpnPI CCDG 5 cut(s) 21, 30, 50, 234, 273
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 31
MalI GATC 4 cut(s) 126, 141, 292, 411
MboI GATC 4 cut(s) 124, 139, 290, 409
MboII GAAGA 2 cut(s) 82, 215
MflI RGATCY 1 cut(s) 409
MluCI AATT 2 cut(s) 248, 252
MnlI CCTC 3 cut(s) 80, 346, 378
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 3 cut(s) 251, 279, 357
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 4 cut(s) 124, 139, 290, 409
NlaIII CATG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 395
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 251
PsiI TTATAA 1 cut(s) 329
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 221
SaqAI TTAA 3 cut(s) 251, 279, 357
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 4 cut(s) 124, 139, 290, 409
SetI ASST 9 cut(s) 8, 24, 91, 147, 211, 244, 306, 370, 438
SfaNI GCATC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 339
Sse9I AATT 2 cut(s) 248, 252
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 97, 109
TaqI TCGA 1 cut(s) 390
TasI AATT 2 cut(s) 248, 252
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 251, 279, 357
Tru9I TTAA 3 cut(s) 251, 279, 357
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 40, 167, 408
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 221
VspI ATTAAT 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.