FvH4_7g01511

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000709
Physical Location & Seq
Reverse (-)
1920305 .. 1922612
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01511.t2

Sequence Viewer

Length: 978 bp
ATGGATGGAGAAGGGAAGGTTGTGTGTGTCACAGGAGCTTCTGGTTTCATAGCTTCATGGCTGGTGAAGCTCTTGTTACAGCGAGGCTATGTTGTCAAAGCCACCGTTCGCGACCCAAATGATCCAAAGAAAACAGAACACTTGCTCGCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTGGAAGAAGGATCTTTCGACCTTGTTGTTGATGGATGTGAAGGTGTTTTCCATACAGCATCTCCGGTAATGTTTTCATCGATCAGCGACCCACAGGCAGAACTGATTGATCCTGCTGTAAATGGAACGCTTAATGTTCTTAAATCATGCACAAAATTTCCAACAATCAAGAGGGTAGTTTTAACATCTTCCATGGGTGCAGTTTTATACAATGGAAGACCTTTAACCTCTAATGTGGTAGTTGATGAAACATGGTTTTCTGATCCACTTTTTTGCGAGGAGTTGAAGGCATGGTATTTTATGTCAAAAACTTTAGCAGAGCAGGCTGCTTGGAAATTTGCTAAAGAAAACGGGATTGACATGGTGACCATAAATCCAGCGTATGTGACGGGTCCGCTCTTGCAGCCAACTCTAAATTACTCTTTGGAGATGCTTCTGAATCTTAAGAATGATATTGACGAAGTAACAGCTGCAAATTATTTATCTGTTGATGTTAGAGATGTTGTCTTGGCTCATGTTCAAGCATTTGAAGTTCCTTCAGCTAGTGGAAGATATAATTTAGCTGGAAGTGTCACCCCCATGGTCGAGGCTTTGAAGATTTTAAAGGAACTTCATCCCAGTTTGCACCCACCTGAAATATGTGAGCATGATATCCCTACTGCCCCAGAGCAACAAGTATCCCAGGAAAAAGCAAAAAGTTTGGGAGTTAGTTTCCTTCCATTGGAAGCAAGTCTCAGGGACACTATTGAAAGCATGAAGGAGAACGGTTTCCTCAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

326

Amino Acids

35.64

Weight (kDa)

5.03

Isoelectric Point (pI)

23.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 111 2.4e-07 NmrA-like family
Epimerase PF01370 8 - 206 7.8e-20 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 208 3.9e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 10 - 206 9.3e-15 Male sterility protein
GDP_Man_Dehyd PF16363 10 - 196 8.9e-11 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 12 - 141 5.7e-09 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 592
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 590
AclWI GGATC 4 cut(s) 116, 214, 299, 452
AcsI RAATTY 2 cut(s) 350, 530
AcuI CTGAAG 1 cut(s) 717
AfiI CCNNNNNNNGG 1 cut(s) 916
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 6 cut(s) 184, 481, 716, 725, 790, 944
AjnI CCWGG 1 cut(s) 876
AluBI AGCT 6 cut(s) 38, 53, 70, 665, 737, 758
AluI AGCT 6 cut(s) 38, 53, 70, 665, 737, 758
Alw26I GTCTC 1 cut(s) 932
AlwI GGATC 4 cut(s) 116, 214, 299, 452
ApeKI GCWGC 3 cut(s) 521, 598, 665
ApoI RAATTY 2 cut(s) 350, 530
Asp700I GAANNNNTTC 2 cut(s) 171, 962
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 3 cut(s) 76, 571, 760
AvaII GGWCC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 508, 610, 652
BccI CCATC 2 cut(s) 149, 221
BciT130I CCWGG 1 cut(s) 878
BciVI GTATCC 1 cut(s) 883
BcoDI GTCTC 1 cut(s) 932
BfaI CTAG 1 cut(s) 738
BfrI CTTAAG 1 cut(s) 638
BfuI GTATCC 1 cut(s) 883
BisI GCNGC 3 cut(s) 522, 599, 666
BlsI GCNGC 3 cut(s) 523, 600, 667
Bme1390I CCNGG 1 cut(s) 878
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 878
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 2 cut(s) 263, 615
BmuI ACTGGG 1 cut(s) 807
BpiI GAAGAC 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 953
Bsa29I ATCGAT 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 387, 774, 876
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 916
Bse1I ACTGG 1 cut(s) 813
BseBI CCWGG 1 cut(s) 878
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 387, 774, 876
BseGI GGATG 3 cut(s) 10, 236, 808
BseLI CCNNNNNNNGG 1 cut(s) 916
BseMII CTCAG 1 cut(s) 943
BseNI ACTGG 1 cut(s) 813
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 3 cut(s) 508, 610, 652
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 275
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 1 cut(s) 916
BsmAI GTCTC 1 cut(s) 932
BsmFI GGGAC 1 cut(s) 947
Bsp143I GATC 5 cut(s) 121, 206, 276, 304, 457
Bsp19I CCATGG 2 cut(s) 387, 774
Bsp68I TCGCGA 1 cut(s) 111
BspACI CCGC 1 cut(s) 590
BspCNI CTCAG 1 cut(s) 942
BspDI ATCGAT 1 cut(s) 275
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 588
BspPI GGATC 4 cut(s) 116, 214, 299, 452
BspTI CTTAAG 1 cut(s) 638
BsrBI CCGCTC 1 cut(s) 592
BsrI ACTGG 1 cut(s) 813
BssECI CCNNGG 3 cut(s) 387, 774, 876
BssMI GATC 5 cut(s) 121, 206, 276, 304, 457
BssT1I CCWWGG 2 cut(s) 387, 774
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 2 cut(s) 106, 962
BstAFI CTTAAG 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 147, 519
BstDEI CTNAG 1 cut(s) 929
BstDSI CCRYGG 2 cut(s) 387, 774
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 3 cut(s) 10, 236, 808
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 5 cut(s) 124, 209, 279, 307, 460
BstMAI GTCTC 1 cut(s) 932
BstMBI GATC 5 cut(s) 121, 206, 276, 304, 457
BstMWI GCNNNNNNNGC 3 cut(s) 67, 518, 598
BstNI CCWGG 1 cut(s) 878
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 876
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 508, 610, 652
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 275
BsuI GTATCC 1 cut(s) 883
BsuTUI ATCGAT 1 cut(s) 275
BtgI CCRYGG 2 cut(s) 387, 774
BtsCI GGATG 3 cut(s) 10, 236, 808
BtuMI TCGCGA 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 147, 519
Cfr13I GGNCC 1 cut(s) 587
ClaI ATCGAT 1 cut(s) 275
DdeI CTNAG 1 cut(s) 929
DpnI GATC 5 cut(s) 123, 208, 278, 306, 459
DpnII GATC 5 cut(s) 121, 206, 276, 304, 457
DraI TTTAAA 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 387, 774
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 717
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 876
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 2 cut(s) 387, 774
ErhI CCWWGG 2 cut(s) 387, 774
FaqI GGGAC 1 cut(s) 947
Fnu4HI GCNGC 3 cut(s) 522, 599, 666
FokI GGATG 3 cut(s) 17, 243, 795
Fsp4HI GCNGC 3 cut(s) 522, 599, 666
FspBI CTAG 1 cut(s) 738
GluI GCNGC 3 cut(s) 522, 599, 666
HapII CCGG 1 cut(s) 260
HinfI GANTC 1 cut(s) 634
HpaII CCGG 1 cut(s) 260
HphI GGTGA 3 cut(s) 76, 571, 760
Hpy188I TCNGA 2 cut(s) 457, 633
Hpy188III TCNNGA 3 cut(s) 110, 364, 970
HpyAV CCTTC 8 cut(s) 5, 10, 197, 230, 475, 741, 920, 946
HpyCH4III ACNGT 2 cut(s) 106, 962
HpyCH4V TGCA 5 cut(s) 345, 395, 598, 668, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 518, 598
HpyF3I CTNAG 1 cut(s) 929
Kzo9I GATC 5 cut(s) 121, 206, 276, 304, 457
LmnI GCTCC 2 cut(s) 35, 158
Lsp1109I GCAGC 3 cut(s) 508, 610, 652
LweI GCATC 2 cut(s) 263, 615
MaeI CTAG 1 cut(s) 738
MaeIII GTNAC 6 cut(s) 28, 75, 559, 580, 658, 766
MalI GATC 5 cut(s) 123, 208, 278, 306, 459
MbiI CCGCTC 1 cut(s) 592
MboI GATC 5 cut(s) 121, 206, 276, 304, 457
MboII GAAGA 5 cut(s) 212, 375, 423, 756, 802
MflI RGATCY 1 cut(s) 206
MluCI AATT 5 cut(s) 350, 530, 610, 670, 751
MmeI TCCRAC 2 cut(s) 177, 380
MnlI CCTC 6 cut(s) 77, 360, 433, 466, 775, 977
MroXI GAANNNNTTC 2 cut(s) 171, 962
MseI TTAA 6 cut(s) 327, 336, 377, 419, 639, 797
MslI CAYNNNNRTG 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 665
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 878
MvaI CCWGG 1 cut(s) 878
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 67, 518, 598
NcoI CCATGG 2 cut(s) 387, 774
NdeII GATC 5 cut(s) 121, 206, 276, 304, 457
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 4 cut(s) 28, 559, 580, 766
NruI TCGCGA 1 cut(s) 111
PdmI GAANNNNTTC 2 cut(s) 171, 962
PfeI GAWTC 1 cut(s) 634
PkrI GCNGC 3 cut(s) 523, 600, 667
Psp6I CCWGG 1 cut(s) 876
PspEI GGTNACC 1 cut(s) 559
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 665
RruI TCGCGA 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 773
SaqAI TTAA 6 cut(s) 327, 336, 377, 419, 639, 797
SatI GCNGC 3 cut(s) 522, 599, 666
Sau3AI GATC 5 cut(s) 121, 206, 276, 304, 457
Sau96I GGNCC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 878
SfaNI GCATC 2 cut(s) 263, 615
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 2 cut(s) 638, 968
SmoI CTYRAG 2 cut(s) 638, 968
Sse9I AATT 5 cut(s) 350, 530, 610, 670, 751
SsiI CCGC 1 cut(s) 590
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 1 cut(s) 876
StyI CCWWGG 2 cut(s) 387, 774
TaaI ACNGT 2 cut(s) 106, 962
TaqI TCGA 3 cut(s) 213, 275, 780
TasI AATT 5 cut(s) 350, 530, 610, 670, 751
TfiI GAWTC 1 cut(s) 634
Tru1I TTAA 6 cut(s) 327, 336, 377, 419, 639, 797
Tru9I TTAA 6 cut(s) 327, 336, 377, 419, 639, 797
TseFI GTSAC 4 cut(s) 28, 559, 580, 766
TseI GCWGC 3 cut(s) 521, 598, 665
Tsp45I GTSAC 4 cut(s) 28, 559, 580, 766
TspDTI ATGAA 7 cut(s) 37, 45, 164, 261, 456, 797, 965
Vha464I CTTAAG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 350, 530
XmnI GAANNNNTTC 2 cut(s) 171, 962
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.