Rorug01G0016400

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000709
Physical Location & Seq
Forward (+)
2860995 .. 2861624
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0016400.1

Sequence Viewer

Length: 423 bp
ATGGAACCACAAACCCAGCAACCAACCGTGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGAGAGAAGCAGAAGAAAAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGACCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

140

Amino Acids

15.79

Weight (kDa)

9.86

Isoelectric Point (pI)

71.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 7.2e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 78, 160
AciI CCGC 3 cut(s) 82, 339, 418
AclWI GGATC 1 cut(s) 188
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 3 cut(s) 130, 193, 398
AluI AGCT 3 cut(s) 130, 193, 398
Alw26I GTCTC 2 cut(s) 191, 258
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 323
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 191, 258
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 78, 160
BisI GCNGC 2 cut(s) 51, 418
BlsI GCNGC 2 cut(s) 52, 419
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 3 cut(s) 6, 155, 416
BmrFI CCNGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseMII CTCAG 1 cut(s) 388
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 191, 258
BsmFI GGGAC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 4 cut(s) 106, 180, 210, 308
BspACI CCGC 3 cut(s) 82, 339, 418
BspCNI CTCAG 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 6, 155, 416
BspMI ACCTGC 2 cut(s) 78, 160
BspPI GGATC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 4 cut(s) 106, 180, 210, 308
Bst4CI ACNGT 2 cut(s) 28, 347
BstDEI CTNAG 1 cut(s) 374
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 4 cut(s) 109, 183, 213, 311
BstMAI GTCTC 2 cut(s) 191, 258
BstMBI GATC 4 cut(s) 106, 180, 210, 308
BstMWI GCNNNNNNNGC 2 cut(s) 79, 384
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 2 cut(s) 78, 160
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 3 cut(s) 70, 293, 301
CviJI RGCY 8 cut(s) 53, 130, 193, 316, 354, 378, 398, 417
CviKI_1 RGCY 8 cut(s) 53, 130, 193, 316, 354, 378, 398, 417
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 374
DpnI GATC 4 cut(s) 108, 182, 212, 310
DpnII GATC 4 cut(s) 106, 180, 210, 308
EciI GGCGGA 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 153, 276
Eco88I CYCGRG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 153
FaeI CATG 3 cut(s) 73, 296, 304
FaiI YATR 6 cut(s) 71, 111, 113, 164, 294, 302
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 69, 292, 300
Fnu4HI GCNGC 2 cut(s) 51, 418
FokI GGATG 2 cut(s) 44, 299
Fsp4HI GCNGC 2 cut(s) 51, 418
GluI GCNGC 2 cut(s) 51, 418
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 3 cut(s) 73, 296, 304
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 3 cut(s) 177, 286, 328
Hpy188III TCNNGA 5 cut(s) 220, 241, 255, 257, 412
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyCH4III ACNGT 2 cut(s) 28, 347
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 384
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 73, 296, 304
Kzo9I GATC 4 cut(s) 106, 180, 210, 308
LmnI GCTCC 2 cut(s) 84, 414
LpnPI CCDG 9 cut(s) 29, 67, 73, 155, 203, 297, 384, 397, 397
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 341
MalI GATC 4 cut(s) 108, 182, 212, 310
MboI GATC 4 cut(s) 106, 180, 210, 308
MboII GAAGA 1 cut(s) 280
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 300
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 6 cut(s) 29, 131, 171, 326, 382, 383
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 2 cut(s) 193, 420
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 79, 384
NciI CCSGG 1 cut(s) 55
NdeII GATC 4 cut(s) 106, 180, 210, 308
NlaIII CATG 3 cut(s) 73, 296, 304
NlaIV GGNNCC 3 cut(s) 6, 155, 416
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 419
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 416
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 348
SatI GCNGC 2 cut(s) 51, 418
Sau3AI GATC 4 cut(s) 106, 180, 210, 308
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 102, 162
Sfr274I CTCGAG 1 cut(s) 255
SinI GGWCC 2 cut(s) 153, 276
SlaI CTCGAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
SsiI CCGC 3 cut(s) 82, 339, 418
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 28, 347
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 256
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 117
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.