FvH4_7g01560

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000709
Physical Location & Seq
Reverse (-)
1961928 .. 1964531
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01560.t2

Sequence Viewer

Length: 987 bp
ATGAGCGGAGCAACGAAGGTTGTGTGTGTAACAGGAGCCTCCGGTTACATAGCATCGTGGCTGGTCAAGCTTTTATTACAACAAGGTTACACTGTAAAAGCCACCGTGCGTGACCCAAATGATGCAAAGAAAACAGAACACTTGCTTTCACTCGATGGAGCAAAGGAAAGGCTTCATTTGTTTAAAGCAGACTTGTTAGAAGAAGGTTCTTTTGATCCTGTCATTCATGGGTGTGAAGGTGTTTTTCATACAGCATCCCCTGTCGTATTATCATCTACTAATCCGCAGGCGGAACTCATTGACCCGGCAGTAAAAGGAACACATAATGTTCTGAAATCATGCGCAAAAACTGCGACTGTCAAGAGAGTGGTTTTTACTTCTTCAATGGCTTTAGTGATGTTGACTGGAAAACCTTTGACCTCAGATGTGGTAGTTGATGAAACATGGTTTTCGGATCCTCTTGTCTGTGAGAAACATAAGCTATGGTATATGCTTTCAAAAACTTTAGCTGAGGAGGCTGCTTGGAAATTTGCCAAGGAAAATGGGATTGACCTAGTTTCAATGAATCCCGGGTTTGTAATTGGACCGCTGTTACAGCCAACTCTTAACCTCTCTGTAGAGGTGATTCAGAGTCTCCTTACTGGCAAGGCATTGCCGGCTACAAATTACAGATTTGTTGATGTTAGAGATGTCGCCTCTGCCCATATTCAAGCATTTGAACTTCCTTCAGCTAGTGGAAGGTATTGTTTGGTTAGCCATTTCGCGCACATCTCCGAGGCTCTGAAGATTATAAGACAACTTTATCCGACTTTGAACATTCCTGAAAGATCTGAGGATGACAAGAATCCTGTTCGTATTCTTCCTTCTGACCCATTTTTTCAAGTATCCAATGAGAAAGCAAAAGGTTTGGGAATTAACTTCTTTCCTCTTGAAGTAACGCTCAAAGACACTGTTGAAAGCCTGAAGGAGAAGGGCTTCCTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

329

Amino Acids

35.96

Weight (kDa)

6.51

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 23 - 213 2.9e-15 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 24 - 207 9.1e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 35 - 168 1.2e-08 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
Acc16I TGCGCA 1 cut(s) 343
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 764
AciI CCGC 4 cut(s) 6, 284, 290, 587
AclWI GGATC 3 cut(s) 209, 449, 462
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 3 cut(s) 711, 803, 983
AgsI TTSAA 9 cut(s) 384, 498, 561, 710, 719, 814, 881, 932, 956
AluBI AGCT 4 cut(s) 70, 481, 509, 731
AluI AGCT 4 cut(s) 70, 481, 509, 731
Alw26I GTCTC 1 cut(s) 638
AlwI GGATC 3 cut(s) 209, 449, 462
Ama87I CYCGRG 1 cut(s) 569
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 1 cut(s) 527
Asp700I GAANNNNTTC 2 cut(s) 171, 974
AspLEI GCGC 2 cut(s) 344, 766
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 3 cut(s) 305, 570, 571
AsuHPI GGTGA 1 cut(s) 634
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 584
BamHI GGATCC 1 cut(s) 454
BarI GAAGNNNNNNTAC 2 cut(s) 847, 879
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 505
BccI CCATC 1 cut(s) 149
BciVI GTATCC 1 cut(s) 895
BcnI CCSGG 3 cut(s) 305, 570, 571
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 2 cut(s) 554, 732
BfmI CTRYAG 1 cut(s) 615
BfuI GTATCC 1 cut(s) 895
BglII AGATCT 1 cut(s) 827
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 3 cut(s) 305, 570, 571
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 37, 456
BmrFI CCNGG 3 cut(s) 305, 570, 571
BmsI GCATC 3 cut(s) 62, 112, 263
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 3 cut(s) 305, 570, 571
BsaJI CCNNGG 3 cut(s) 534, 569, 774
BsaWI WCCGGW 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 2 cut(s) 409, 646
Bse3DI GCAATG 1 cut(s) 650
BseDI CCNNGG 3 cut(s) 534, 569, 774
BseGI GGATG 2 cut(s) 254, 841
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 3 cut(s) 435, 501, 822
BseNI ACTGG 2 cut(s) 409, 646
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 1 cut(s) 505
Bsh1236I CGCG 1 cut(s) 764
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 4 cut(s) 42, 305, 570, 656
BsmAI GTCTC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 569
Bsp143I GATC 3 cut(s) 214, 454, 827
BspACI CCGC 4 cut(s) 6, 284, 290, 587
BspCNI CTCAG 3 cut(s) 434, 502, 823
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 2 cut(s) 37, 456
BspPI GGATC 3 cut(s) 209, 449, 462
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 650
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 2 cut(s) 409, 646
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 3 cut(s) 534, 569, 774
BssMI GATC 3 cut(s) 214, 454, 827
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 4 cut(s) 94, 106, 358, 952
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 288, 657
BstDEI CTNAG 3 cut(s) 421, 510, 831
BstF5I GGATG 2 cut(s) 254, 841
BstFNI CGCG 1 cut(s) 764
BstHHI GCGC 2 cut(s) 344, 766
BstKTI GATC 3 cut(s) 217, 457, 830
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 3 cut(s) 214, 454, 827
BstMWI GCNNNNNNNGC 5 cut(s) 67, 350, 515, 595, 656
BstSCI CCNGG 3 cut(s) 303, 568, 569
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 1 cut(s) 505
BstX2I RGATCY 2 cut(s) 454, 827
BstYI RGATCY 2 cut(s) 454, 827
BsuI GTATCC 1 cut(s) 895
BtsCI GGATG 2 cut(s) 254, 841
BtsIMutI CAGTG 2 cut(s) 90, 948
Cac8I GCNNGC 2 cut(s) 288, 657
CfoI GCGC 2 cut(s) 344, 766
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 584
Cfr9I CCCGGG 1 cut(s) 569
CviAII CATG 3 cut(s) 227, 339, 444
DdeI CTNAG 3 cut(s) 421, 510, 831
DpnI GATC 3 cut(s) 216, 456, 829
DpnII GATC 3 cut(s) 214, 454, 827
DraI TTTAAA 1 cut(s) 184
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 3 cut(s) 711, 803, 983
Eco88I CYCGRG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 3 cut(s) 230, 342, 447
FatI CATG 3 cut(s) 226, 338, 443
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 2 cut(s) 241, 848
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 2 cut(s) 554, 732
FspI TGCGCA 1 cut(s) 343
GlaI GCGC 2 cut(s) 343, 765
GluI GCNGC 1 cut(s) 519
HapII CCGG 4 cut(s) 42, 305, 570, 656
HhaI GCGC 2 cut(s) 344, 766
Hin1II CATG 3 cut(s) 230, 342, 447
Hin6I GCGC 2 cut(s) 342, 764
HinP1I GCGC 2 cut(s) 342, 764
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 4 cut(s) 565, 625, 631, 844
HpaII CCGG 4 cut(s) 42, 305, 570, 656
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 9 cut(s) 333, 424, 454, 630, 775, 783, 807, 832, 868
Hpy188III TCNNGA 3 cut(s) 361, 821, 929
Hpy8I GTNNAC 1 cut(s) 402
HpyAV CCTTC 8 cut(s) 10, 197, 230, 732, 735, 873, 958, 964
HpyCH4III ACNGT 4 cut(s) 94, 106, 358, 952
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 350, 515, 595, 656
HpyF3I CTNAG 3 cut(s) 421, 510, 831
Hsp92II CATG 3 cut(s) 230, 342, 447
HspAI GCGC 2 cut(s) 342, 764
KroI GCCGGC 1 cut(s) 655
KroNI GCCGGC 1 cut(s) 657
Kzo9I GATC 3 cut(s) 214, 454, 827
LmnI GCTCC 3 cut(s) 8, 35, 158
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 3 cut(s) 62, 112, 263
MaeI CTAG 2 cut(s) 554, 732
MaeIII GTNAC 6 cut(s) 28, 44, 86, 110, 591, 934
MalI GATC 3 cut(s) 216, 456, 829
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 214, 454, 827
MboII GAAGA 4 cut(s) 212, 372, 796, 851
MflI RGATCY 2 cut(s) 454, 827
MluCI AATT 5 cut(s) 527, 579, 664, 912, 982
MlyI GAGTC 1 cut(s) 640
MmeI TCCRAC 1 cut(s) 830
MroNI GCCGGC 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 171, 974
MseI TTAA 3 cut(s) 183, 606, 915
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 4 cut(s) 42, 305, 570, 656
MspR9I CCNGG 3 cut(s) 305, 570, 571
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 5 cut(s) 67, 350, 515, 595, 656
NaeI GCCGGC 1 cut(s) 657
NciI CCSGG 3 cut(s) 305, 570, 571
NdeII GATC 3 cut(s) 214, 454, 827
NgoMIV GCCGGC 1 cut(s) 655
NlaIII CATG 3 cut(s) 230, 342, 447
NlaIV GGNNCC 2 cut(s) 37, 456
NmuCI GTSAC 1 cut(s) 110
NsbI TGCGCA 1 cut(s) 343
PdiI GCCGGC 1 cut(s) 657
PdmI GAANNNNTTC 2 cut(s) 171, 974
PfeI GAWTC 3 cut(s) 565, 625, 844
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
PsiI TTATAA 1 cut(s) 791
PspN4I GGNNCC 2 cut(s) 37, 456
PspPI GGNCC 1 cut(s) 584
PsuI RGATCY 2 cut(s) 454, 827
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 3 cut(s) 183, 606, 915
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 3 cut(s) 214, 454, 827
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 3 cut(s) 305, 570, 571
SfaNI GCATC 3 cut(s) 62, 112, 263
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 1 cut(s) 584
SmaI CCCGGG 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 5 cut(s) 527, 579, 664, 912, 982
SsiI CCGC 4 cut(s) 6, 284, 290, 587
SspMI CTAG 2 cut(s) 554, 732
StyD4I CCNGG 3 cut(s) 303, 568, 569
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 4 cut(s) 94, 106, 358, 952
TaqI TCGA 1 cut(s) 153
TasI AATT 5 cut(s) 527, 579, 664, 912, 982
TfiI GAWTC 3 cut(s) 565, 625, 844
Tru1I TTAA 3 cut(s) 183, 606, 915
Tru9I TTAA 3 cut(s) 183, 606, 915
TscAI CASTG 2 cut(s) 97, 955
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 5 cut(s) 164, 215, 236, 453, 578
TspMI CCCGGG 1 cut(s) 569
TspRI CASTG 2 cut(s) 97, 955
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 1 cut(s) 527
XmaI CCCGGG 1 cut(s) 569
XmnI GAANNNNTTC 2 cut(s) 171, 974
XspI CTAG 2 cut(s) 554, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.