Rh1BG023800

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000709
Physical Location & Seq
Reverse (-)
3150324 .. 3167049
16726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG023800.1

Sequence Viewer

Length: 990 bp
ATGAGCGGAGCAGGGAAAGGTATTGTCTGTGTAACAGGAGCATCTGGTTATATTGCATCATGGCTGGTCAAGCTTTTGCTACAACGTGGTTATATTTTCAAAGGCACTGTTCGGGACCCAAACGATCCCAAAAAAACAGAACACTTACTTTCACTTGAGGGGGCAAAAGAAAGGCTTCATTTGTTCAAAGCAGATTTGCTAGATGAAGGATCTTTTGACCCTGTAGTTGATGGATGTGACTGTGTTTTTCACACCGCATCTCCCGTATCTTTTTCATCAGTCAGTGACCCTCAGGCAGAACTAATTGACCCTGCTGTGAAGGGAACATTACATGTTCTGAAATCATGTGCAAAATTTCCAACCGTCAAGCGAGTGGTTTTGACATCTTCTTTGGCTTCAGTAATGATGAATGGAAAACCTCTGACCCCTGATGTTGTAGTGGATGAAACATGGTATTCAGATCCACTAATTGCTGAGAAGCACAAGCTGTGGTATATTCTTTCAAAGACTTTAGCTGAGGAGGCTGCTTGGAAATTTGCTGAAGGAAATAGGATTGACTTGGTTTCAATAAATCCGGGGTTTGTGATTGGACCACTCTTACAGCCGACAATTAATTTGACGGTGGAGATGATTCAGAACCTCATAACTGGCAAGGCAGTGCCCGCTTCAAATTACAGATTTATTGATGTTAGAGATGTTGCCGCTGCACATATTCAAGCATTTGAAATTCTTTCAGCTAGTGGAAGGTATTGTTTGGTCAGCCATGTTGCAAATATTTCCGAGACTCTAGAGATGATACGACAACTTTATCCCACAATGTACATTCCTGAAAGATGTGAGGATGACAATCCTCTTTTGAATCCTTCTGGCCCACAGTTTCAAGTATCCAAGGAGAAAGCAAAAAGTCTGGGAATTAGTTTTCATCCATTGGAAGTAACTCTGAAGGACACTATTGAAAGCCTGAAGGAGAAGGGTTTCCTCAACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

329

Amino Acids

36.13

Weight (kDa)

5.93

Isoelectric Point (pI)

25.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 107 5.1e-07 NmrA-like family
Epimerase PF01370 9 - 242 3.2e-23 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 246 2.1e-18 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 11 - 201 5.5e-11 Male sterility protein
GDP_Man_Dehyd PF16363 11 - 130 1.5e-11 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 13 - 133 4.9e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 4 cut(s) 6, 255, 663, 702
AclWI GGATC 3 cut(s) 119, 217, 455
AcsI RAATTY 3 cut(s) 353, 533, 726
AcuI CTGAAG 4 cut(s) 381, 561, 962, 983
AfaI GTAC 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 331
AluBI AGCT 4 cut(s) 73, 487, 515, 737
AluI AGCT 4 cut(s) 73, 487, 515, 737
Alw26I GTCTC 1 cut(s) 776
AlwI GGATC 3 cut(s) 119, 217, 455
AoxI GGCC 1 cut(s) 868
ApeKI GCWGC 2 cut(s) 524, 704
ApoI RAATTY 3 cut(s) 353, 533, 726
ArsI GACNNNNNNTTYG 4 cut(s) 373, 405, 598, 630
AseI ATTAAT 1 cut(s) 612
Asp700I GAANNNNTTC 2 cut(s) 174, 974
AspS9I GGNCC 3 cut(s) 115, 590, 869
AsuC2I CCSGG 1 cut(s) 576
AvaII GGWCC 2 cut(s) 115, 590
AxyI CCTNAGG 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 663
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 511, 691
BccI CCATC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 895
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 776
BfaI CTAG 3 cut(s) 200, 738, 788
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 895
BisI GCNGC 3 cut(s) 525, 702, 705
BlsI GCNGC 3 cut(s) 526, 703, 706
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 2 cut(s) 115, 590
BmgT120I GGNCC 3 cut(s) 115, 590, 869
BmiI GGNNCC 2 cut(s) 116, 117
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 50, 65, 266
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 846
BsaJI CCNNGG 2 cut(s) 575, 888
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bse1I ACTGG 1 cut(s) 652
Bse21I CCTNAGG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 575, 888
BseGI GGATG 4 cut(s) 239, 448, 847, 922
BseJI GATNNNNATC 1 cut(s) 846
BseMII CTCAG 3 cut(s) 305, 465, 507
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 2 cut(s) 511, 691
BsgI GTGCAG 1 cut(s) 690
BshFI GGCC 1 cut(s) 870
BsiSI CCGG 1 cut(s) 575
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 776
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 663
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 3 cut(s) 124, 209, 460
BspACI CCGC 4 cut(s) 6, 255, 663, 702
BspANI GGCC 1 cut(s) 870
BspCNI CTCAG 3 cut(s) 304, 466, 508
BspLI GGNNCC 2 cut(s) 116, 117
BspPI GGATC 3 cut(s) 119, 217, 455
BsrBI CCGCTC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 1 cut(s) 652
BssECI CCNNGG 2 cut(s) 575, 888
BssMI GATC 3 cut(s) 124, 209, 460
BssT1I CCWWGG 1 cut(s) 888
Bst4CI ACNGT 5 cut(s) 109, 242, 364, 622, 876
BstAUI TGTACA 1 cut(s) 819
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 3 cut(s) 291, 474, 516
BstF5I GGATG 4 cut(s) 239, 448, 847, 922
BstKTI GATC 3 cut(s) 127, 212, 463
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 3 cut(s) 124, 209, 460
BstMWI GCNNNNNNNGC 3 cut(s) 70, 521, 662
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 511, 691
BstX2I RGATCY 2 cut(s) 209, 460
BstYI RGATCY 2 cut(s) 209, 460
Bsu36I CCTNAGG 1 cut(s) 291
BsuI GTATCC 1 cut(s) 895
BsuRI GGCC 1 cut(s) 870
BtsCI GGATG 4 cut(s) 239, 448, 847, 922
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 3 cut(s) 105, 289, 663
Cac8I GCNNGC 1 cut(s) 663
Cfr13I GGNCC 3 cut(s) 115, 590, 869
Csp6I GTAC 1 cut(s) 820
CviAII CATG 5 cut(s) 60, 332, 345, 450, 764
CviQI GTAC 1 cut(s) 820
DdeI CTNAG 3 cut(s) 291, 474, 516
DpnI GATC 3 cut(s) 126, 211, 462
DpnII GATC 3 cut(s) 124, 209, 460
Eco130I CCWWGG 1 cut(s) 888
Eco47I GGWCC 2 cut(s) 115, 590
Eco57I CTGAAG 4 cut(s) 381, 561, 962, 983
Eco81I CCTNAGG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 888
FaeI CATG 5 cut(s) 63, 335, 348, 453, 767
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 128
FatI CATG 5 cut(s) 59, 331, 344, 449, 763
FauI CCCGC 1 cut(s) 670
FauNDI CATATG 1 cut(s) 986
Fnu4HI GCNGC 3 cut(s) 525, 702, 705
FokI GGATG 4 cut(s) 246, 455, 854, 909
Fsp4HI GCNGC 3 cut(s) 525, 702, 705
FspBI CTAG 3 cut(s) 200, 738, 788
GluI GCNGC 3 cut(s) 525, 702, 705
HaeIII GGCC 1 cut(s) 870
HapII CCGG 1 cut(s) 575
Hin1II CATG 5 cut(s) 63, 335, 348, 453, 767
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 3 cut(s) 631, 784, 859
HpaII CCGG 1 cut(s) 575
Hpy188I TCNGA 6 cut(s) 339, 423, 460, 636, 781, 942
Hpy188III TCNNGA 3 cut(s) 113, 788, 827
HpyAV CCTTC 8 cut(s) 200, 313, 536, 738, 873, 937, 958, 964
HpyCH4III ACNGT 5 cut(s) 109, 242, 364, 622, 876
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 56, 350, 707, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 521, 662
HpyF3I CTNAG 3 cut(s) 291, 474, 516
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 5 cut(s) 63, 335, 348, 453, 767
KflI GGGWCCC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 124, 209, 460
LmnI GCTCC 2 cut(s) 8, 38
Lsp1109I GCAGC 2 cut(s) 511, 691
LweI GCATC 3 cut(s) 50, 65, 266
MaeI CTAG 3 cut(s) 200, 738, 788
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 4 cut(s) 31, 236, 284, 934
MalI GATC 3 cut(s) 126, 211, 462
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 124, 209, 460
MboII GAAGA 1 cut(s) 378
MflI RGATCY 2 cut(s) 209, 460
MhlI GDGCHC 1 cut(s) 663
MluCI AATT 9 cut(s) 303, 353, 468, 533, 609, 613, 670, 726, 912
MlyI GAGTC 1 cut(s) 778
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 9 cut(s) 151, 300, 429, 511, 514, 650, 832, 861, 989
MroXI GAANNNNTTC 2 cut(s) 174, 974
MseI TTAA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 576
MwoI GCNNNNNNNGC 3 cut(s) 70, 521, 662
NciI CCSGG 1 cut(s) 576
NdeI CATATG 1 cut(s) 986
NdeII GATC 3 cut(s) 124, 209, 460
NlaIII CATG 5 cut(s) 63, 335, 348, 453, 767
NlaIV GGNNCC 2 cut(s) 116, 117
NmuCI GTSAC 2 cut(s) 236, 284
NspI RCATGY 1 cut(s) 335
PciI ACATGT 1 cut(s) 331
PdmI GAANNNNTTC 2 cut(s) 174, 974
PfeI GAWTC 2 cut(s) 631, 859
PkrI GCNGC 3 cut(s) 526, 703, 706
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
PpuMI RGGWCCY 1 cut(s) 115
PscI ACATGT 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 116, 117
PspPI GGNCC 3 cut(s) 115, 590, 869
PspPPI RGGWCCY 1 cut(s) 115
PsuI RGATCY 2 cut(s) 209, 460
RsaI GTAC 1 cut(s) 821
RsaNI GTAC 1 cut(s) 820
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 3 cut(s) 525, 702, 705
Sau3AI GATC 3 cut(s) 124, 209, 460
Sau96I GGNCC 3 cut(s) 115, 590, 869
SchI GAGTC 1 cut(s) 778
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 1 cut(s) 663
SetI ASST 9 cut(s) 22, 75, 88, 421, 489, 517, 642, 739, 749
SfaNI GCATC 3 cut(s) 50, 65, 266
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 115, 590
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 9 cut(s) 303, 353, 468, 533, 609, 613, 670, 726, 912
SsiI CCGC 4 cut(s) 6, 255, 663, 702
SspI AATATT 1 cut(s) 775
SspMI CTAG 3 cut(s) 200, 738, 788
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 5 cut(s) 109, 242, 364, 622, 876
TaiI ACGT 1 cut(s) 88
TasI AATT 9 cut(s) 303, 353, 468, 533, 609, 613, 670, 726, 912
TatI WGTACW 1 cut(s) 819
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 2 cut(s) 631, 859
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 3 cut(s) 112, 289, 663
TseFI GTSAC 2 cut(s) 236, 284
TseI GCWGC 2 cut(s) 524, 704
Tsp45I GTSAC 2 cut(s) 236, 284
TspDTI ATGAA 6 cut(s) 167, 219, 264, 422, 459, 911
TspRI CASTG 3 cut(s) 112, 289, 663
VpaK11BI GGWCC 2 cut(s) 115, 590
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 3 cut(s) 353, 533, 726
XbaI TCTAGA 1 cut(s) 787
XceI RCATGY 1 cut(s) 335
XmnI GAANNNNTTC 2 cut(s) 174, 974
XspI CTAG 3 cut(s) 200, 738, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.