Prupe.2G020700_v2.0.a1

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000709
Physical Location & Seq
Reverse (-)
2056101 .. 2062260
6160 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G020700.1

Sequence Viewer

Length: 981 bp
ATGAGCAGAGAAGGGAAGGTGGTGTGTGTAACAGGAGCGTCTGGTTTCATAGCATCATGGCTGGTGAAGCTCTTATTACAACGCGGTTACATTGTCAAAGCCACGGTTCGTGACCCAAATGACTCAAAGAAAACAGAACACTTATTGGCACTTGATGGGGCAAAAGAAAGGCTGCATTTGTTCCAAGCAGATTTGATAGAAGAAGGATCTTTTGACGCTGCAGTTGATGGATGTGAAGGTGTTTTTCATACAGCATCCCCTGTTCTATTTTCAGCCAATAACCCTCAGGCAGAATTAATTGACCCTGCAGTGAAGGGAACCCTTAATGTACTAAAATCATGTGTAAAATTCGCTACCGTCAAGAGGGTAGTTTTAACATCTTCTACGGCTGCAGTCATTGTCAATGGAAGACCATTGACCCCTGATGTGGTGGTTGATGAAACATGGTTTTCGGATCCTTTTTTTTGTGAGAATTTTAAGATCGCGAAATGGTATGTTCTTTCGAAAACTTTAGCTGAGGAAGCTGCTTGGAAATTTGCTGAAGGAAATGGAATTGACTTGGTTACCATAAATCCATCCTATGTGATTGGTCCACTCTTACAACCAAGCCTTAATCTCACTGTGGAGATGATTCTCAACCTCAAAAACGATATTGAAGATGTAAACAGTTCAATTTATTCATGTAGTGATGTTAGAGATGTTGCCTCAGCTCATGTTCAAGCATTTGAGGTTCCTTCAGCTAATGGAAGATATTGTTTAGTTGGACATGTTACACCCATGGCCAAGGTTCTGAAGATTTTACATGAACTTCATCCCTCTCTGTGTCCACCTGAAAAATATGAGGAGGCCAATCCTTCTGAACCCACATATCAAGTATCACAGGAAAAAGCAAAAAGTTTGGGAGTTAATTTCCTTCCACTGGAAGTAAGTCTTAGGGACACTGTTGAAAGCCTCAAGGAGAAGGGCTTCCTCAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

327

Amino Acids

35.67

Weight (kDa)

5.47

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 84, 485
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 214, 449, 462
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 3 cut(s) 347, 472, 533
AcuI CTGAAG 3 cut(s) 561, 720, 812
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 363, 427, 919
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 4 cut(s) 656, 672, 719, 947
AluBI AGCT 5 cut(s) 70, 515, 524, 710, 740
AluI AGCT 5 cut(s) 70, 515, 524, 710, 740
AlwI GGATC 3 cut(s) 214, 449, 462
AoxI GGCC 2 cut(s) 780, 846
ApeKI GCWGC 4 cut(s) 172, 218, 389, 524
ApoI RAATTY 3 cut(s) 347, 472, 533
AseI ATTAAT 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 965
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 285
BalI TGGCCA 1 cut(s) 782
BamHI GGATCC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 415
BbvCI CCTCAGC 2 cut(s) 516, 706
BbvI GCAGC 4 cut(s) 159, 205, 376, 511
BccI CCATC 3 cut(s) 149, 221, 583
BceAI ACGGC 1 cut(s) 402
BfmI CTRYAG 3 cut(s) 219, 306, 390
BisI GCNGC 4 cut(s) 173, 219, 390, 525
BlsI GCNGC 4 cut(s) 174, 220, 391, 526
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 3 cut(s) 319, 456, 732
BmsI GCATC 2 cut(s) 62, 263
BpiI GAAGAC 1 cut(s) 415
Bpu10I CCTNAGC 2 cut(s) 516, 706
Bpu14I TTCGAA 1 cut(s) 503
BpuEI CTTGAG 2 cut(s) 938, 956
BsaJI CCNNGG 3 cut(s) 102, 777, 783
Bsc4I CCNNNNNNNGG 3 cut(s) 363, 427, 919
Bse1I ACTGG 1 cut(s) 924
Bse21I CCTNAGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 102, 777, 783
BseGI GGATG 4 cut(s) 236, 254, 575, 811
BseLI CCNNNNNNNGG 3 cut(s) 363, 427, 919
BseMII CTCAG 3 cut(s) 299, 507, 720
BseNI ACTGG 1 cut(s) 924
BseRI GAGGAG 1 cut(s) 857
BseXI GCAGC 4 cut(s) 159, 205, 376, 511
Bsh1236I CGCG 2 cut(s) 84, 485
BshFI GGCC 2 cut(s) 782, 848
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 3 cut(s) 363, 427, 919
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 2 cut(s) 782, 848
Bsp119I TTCGAA 1 cut(s) 503
Bsp143I GATC 3 cut(s) 206, 454, 480
Bsp19I CCATGG 1 cut(s) 777
Bsp68I TCGCGA 1 cut(s) 485
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 782, 848
BspCNI CTCAG 3 cut(s) 298, 508, 719
BspFNI CGCG 2 cut(s) 84, 485
BspLI GGNNCC 3 cut(s) 319, 456, 732
BspMAI CTGCAG 3 cut(s) 223, 310, 394
BspPI GGATC 3 cut(s) 214, 449, 462
BspT104I TTCGAA 1 cut(s) 503
BsrI ACTGG 1 cut(s) 924
BssECI CCNNGG 3 cut(s) 102, 777, 783
BssMI GATC 3 cut(s) 206, 454, 480
BssT1I CCWWGG 2 cut(s) 777, 783
Bst4CI ACNGT 5 cut(s) 106, 358, 622, 668, 943
BstBI TTCGAA 1 cut(s) 503
BstDEI CTNAG 4 cut(s) 285, 516, 706, 932
BstDSI CCRYGG 2 cut(s) 102, 777
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 4 cut(s) 236, 254, 575, 811
BstFNI CGCG 2 cut(s) 84, 485
BstKTI GATC 3 cut(s) 209, 457, 483
BstMBI GATC 3 cut(s) 206, 454, 480
BstMWI GCNNNNNNNGC 2 cut(s) 67, 521
BstNSI RCATGY 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 562
BstSFI CTRYAG 3 cut(s) 219, 306, 390
BstUI CGCG 2 cut(s) 84, 485
BstV1I GCAGC 4 cut(s) 159, 205, 376, 511
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 2 cut(s) 206, 454
BstYI RGATCY 2 cut(s) 206, 454
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 782, 848
BtgI CCRYGG 2 cut(s) 102, 777
BtsCI GGATG 4 cut(s) 236, 254, 575, 811
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 4 cut(s) 315, 618, 917, 939
BtuMI TCGCGA 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 2 cut(s) 27, 224
Csp6I GTAC 1 cut(s) 329
CviAII CATG 8 cut(s) 57, 339, 444, 681, 713, 767, 778, 803
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 4 cut(s) 285, 516, 706, 932
DpnI GATC 3 cut(s) 208, 456, 482
DpnII GATC 3 cut(s) 206, 454, 480
EaeI YGGCCR 1 cut(s) 780
Eco130I CCWWGG 2 cut(s) 777, 783
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 3 cut(s) 561, 720, 812
Eco81I CCTNAGG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 777, 783
ErhI CCWWGG 2 cut(s) 777, 783
FaeI CATG 8 cut(s) 60, 342, 447, 684, 716, 770, 781, 806
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 1 cut(s) 950
FatI CATG 8 cut(s) 56, 338, 443, 680, 712, 766, 777, 802
Fnu4HI GCNGC 4 cut(s) 173, 219, 390, 525
FokI GGATG 4 cut(s) 241, 243, 562, 798
Fsp4HI GCNGC 4 cut(s) 173, 219, 390, 525
GluI GCNGC 4 cut(s) 173, 219, 390, 525
HaeIII GGCC 2 cut(s) 782, 848
HgaI GACGC 2 cut(s) 27, 224
Hin1II CATG 8 cut(s) 60, 342, 447, 684, 716, 770, 781, 806
HinfI GANTC 2 cut(s) 122, 631
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 593, 664, 827
Hpy188I TCNGA 3 cut(s) 454, 792, 859
Hpy188III TCNNGA 3 cut(s) 110, 361, 484
Hpy8I GTNNAC 3 cut(s) 593, 664, 827
HpyCH4III ACNGT 5 cut(s) 106, 358, 622, 668, 943
HpyCH4V TGCA 4 cut(s) 175, 221, 308, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 521
HpyF3I CTNAG 4 cut(s) 285, 516, 706, 932
Hsp92II CATG 8 cut(s) 60, 342, 447, 684, 716, 770, 781, 806
Kzo9I GATC 3 cut(s) 206, 454, 480
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 4 cut(s) 159, 205, 376, 511
LweI GCATC 2 cut(s) 62, 263
MaeIII GTNAC 5 cut(s) 28, 86, 110, 562, 769
MalI GATC 3 cut(s) 208, 456, 482
MboI GATC 3 cut(s) 206, 454, 480
MboII GAAGA 6 cut(s) 212, 372, 420, 668, 759, 805
MflI RGATCY 2 cut(s) 206, 454
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 8 cut(s) 293, 297, 347, 472, 533, 552, 672, 907
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 742
Mox20I TGGCCA 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 965
MscI TGGCCA 1 cut(s) 782
MseI TTAA 6 cut(s) 296, 324, 374, 477, 612, 906
Msp20I TGGCCA 1 cut(s) 782
MvnI CGCG 2 cut(s) 84, 485
MwoI GCNNNNNNNGC 2 cut(s) 67, 521
NcoI CCATGG 1 cut(s) 777
NdeII GATC 3 cut(s) 206, 454, 480
NlaIII CATG 8 cut(s) 60, 342, 447, 684, 716, 770, 781, 806
NlaIV GGNNCC 3 cut(s) 319, 456, 732
NmuCI GTSAC 1 cut(s) 110
NruI TCGCGA 1 cut(s) 485
NspI RCATGY 1 cut(s) 770
NspV TTCGAA 1 cut(s) 503
PciI ACATGT 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 965
PfeI GAWTC 1 cut(s) 631
PkrI GCNGC 4 cut(s) 174, 220, 391, 526
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 766
PshBI ATTAAT 1 cut(s) 296
PspEI GGTNACC 1 cut(s) 562
PspN4I GGNNCC 3 cut(s) 319, 456, 732
PspPI GGNCC 1 cut(s) 590
PstI CTGCAG 3 cut(s) 223, 310, 394
PsuI RGATCY 2 cut(s) 206, 454
RruI TCGCGA 1 cut(s) 485
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SaqAI TTAA 6 cut(s) 296, 324, 374, 477, 612, 906
SatI GCNGC 4 cut(s) 173, 219, 390, 525
Sau3AI GATC 3 cut(s) 206, 454, 480
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 116
SfaNI GCATC 2 cut(s) 62, 263
SfcI CTRYAG 3 cut(s) 219, 306, 390
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 1 cut(s) 590
SmlI CTYRAG 2 cut(s) 953, 971
SmoI CTYRAG 2 cut(s) 953, 971
Sse9I AATT 8 cut(s) 293, 297, 347, 472, 533, 552, 672, 907
SsiI CCGC 1 cut(s) 84
StyI CCWWGG 2 cut(s) 777, 783
TaaI ACNGT 5 cut(s) 106, 358, 622, 668, 943
TaqI TCGA 1 cut(s) 503
TasI AATT 8 cut(s) 293, 297, 347, 472, 533, 552, 672, 907
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 1 cut(s) 631
Tru1I TTAA 6 cut(s) 296, 324, 374, 477, 612, 906
Tru9I TTAA 6 cut(s) 296, 324, 374, 477, 612, 906
TscAI CASTG 4 cut(s) 315, 625, 924, 946
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 172, 218, 389, 524
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 6 cut(s) 37, 236, 453, 669, 800, 819
TspRI CASTG 4 cut(s) 315, 625, 924, 946
VpaK11BI GGWCC 1 cut(s) 590
VspI ATTAAT 1 cut(s) 296
XapI RAATTY 3 cut(s) 347, 472, 533
XceI RCATGY 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.