Rmu_sc0001403.1_g000012

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001403.1
OG0000709
Physical Location & Seq
Reverse (-)
43863 .. 47028
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001403.1_g000012.1.cds

Sequence Viewer

Length: 942 bp
atgagcggagcagggaaaggtgttgtctgtgtaacaggggcatctggttatattgcatcatggctggtcaagcttttgctacaacgtggttatattgtcaaaggcactgttcgggacccaaacgatcccaaaaaaacagaacacttactttcacttgagggggcaaaagaaaggcttcatttgttcaaagcagatttgctagatgaaggatcttttgaccctgcagttgatggatgtgactgtgtttttcataccgcatctccggcagaactaattgaccctgctgtgaagggaacattaaatgttctgaaatcatgtgcaaaatttccaaccgtcaagcgagtggttttgacatcttctttggcttcagtaatgatgaatggaaaacctctgacccctgatgttgtagtggatgaaacatggtattcagatccactaattgctgagaagcacaagctgtggtatattctttcaaagactttagctgaggaggctgcttggaaatttgctgaaggaaataggattgacttggtttcaataaatccggggtttgtgattggaccactcttacagccgacaattaatttgacggtggagatgattcagaacctcataactggcaaggcagtgcccgcttcaaattacagatttattgatgttagagatgttgccgctgcacatattcaagcatttgaaattctttcagctagtggaaggtattgtttggtcagccatgttgcaaatatttccgagactctagagatgatacgacaactttatcccacaatgtacattcctgaaagatgtgaggatccttctggcccacagtttcaagtatccaaggagaaagcaaaaagtctgggaattagttttcatccattggaagtaactctgaaggacactattgaaagcctgaaggagaagggtttcctcaacatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

313

Amino Acids

34.31

Weight (kDa)

6.19

Isoelectric Point (pI)

25.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 4 cut(s) 6, 255, 633, 672
AclWI GGATC 5 cut(s) 119, 217, 425, 806, 819
AcsI RAATTY 3 cut(s) 323, 503, 696
AcuI CTGAAG 4 cut(s) 351, 531, 914, 935
AfaI GTAC 1 cut(s) 791
AgsI TTSAA 8 cut(s) 187, 474, 537, 639, 686, 695, 833, 908
AluBI AGCT 4 cut(s) 73, 457, 485, 707
AluI AGCT 4 cut(s) 73, 457, 485, 707
Alw26I GTCTC 1 cut(s) 746
AlwI GGATC 5 cut(s) 119, 217, 425, 806, 819
AoxI GGCC 1 cut(s) 820
ApeKI GCWGC 2 cut(s) 494, 674
ApoI RAATTY 3 cut(s) 323, 503, 696
ArsI GACNNNNNNTTYG 4 cut(s) 343, 375, 568, 600
AseI ATTAAT 1 cut(s) 582
Asp700I GAANNNNTTC 2 cut(s) 174, 926
AspS9I GGNCC 3 cut(s) 115, 560, 821
AsuC2I CCSGG 1 cut(s) 546
AvaII GGWCC 2 cut(s) 115, 560
BaeGI GKGCMC 1 cut(s) 633
BamHI GGATCC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 486
BbvI GCAGC 2 cut(s) 481, 661
BccI CCATC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 847
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 746
BfaI CTAG 3 cut(s) 200, 708, 758
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 847
BisI GCNGC 3 cut(s) 495, 672, 675
BlsI GCNGC 3 cut(s) 496, 673, 676
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 2 cut(s) 115, 560
BmgT120I GGNCC 3 cut(s) 115, 560, 821
BmiI GGNNCC 3 cut(s) 116, 117, 813
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 3 cut(s) 50, 65, 266
Bpu10I CCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 545, 840
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bse1I ACTGG 1 cut(s) 622
BseDI CCNNGG 2 cut(s) 545, 840
BseGI GGATG 3 cut(s) 239, 418, 874
BseMII CTCAG 2 cut(s) 435, 477
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 2 cut(s) 481, 661
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 1 cut(s) 822
BsiSI CCGG 2 cut(s) 263, 545
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 822
Bsp1286I GDGCHC 1 cut(s) 633
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 4 cut(s) 124, 209, 430, 811
BspACI CCGC 4 cut(s) 6, 255, 633, 672
BspANI GGCC 1 cut(s) 822
BspCNI CTCAG 2 cut(s) 436, 478
BspLI GGNNCC 3 cut(s) 116, 117, 813
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 5 cut(s) 119, 217, 425, 806, 819
BsrBI CCGCTC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 545, 840
BssMI GATC 4 cut(s) 124, 209, 430, 811
BssT1I CCWWGG 1 cut(s) 840
Bst4CI ACNGT 5 cut(s) 109, 242, 334, 592, 828
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 444, 486
BstF5I GGATG 3 cut(s) 239, 418, 874
BstKTI GATC 4 cut(s) 127, 212, 433, 814
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 4 cut(s) 124, 209, 430, 811
BstMWI GCNNNNNNNGC 4 cut(s) 70, 263, 491, 632
BstSCI CCNGG 1 cut(s) 544
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 633
BstV1I GCAGC 2 cut(s) 481, 661
BstX2I RGATCY 3 cut(s) 209, 430, 811
BstYI RGATCY 3 cut(s) 209, 430, 811
BsuI GTATCC 1 cut(s) 847
BsuRI GGCC 1 cut(s) 822
BtsCI GGATG 3 cut(s) 239, 418, 874
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 105, 633
Cac8I GCNNGC 1 cut(s) 633
Cfr13I GGNCC 3 cut(s) 115, 560, 821
Csp6I GTAC 1 cut(s) 790
CviAII CATG 4 cut(s) 60, 315, 420, 734
CviQI GTAC 1 cut(s) 790
DdeI CTNAG 2 cut(s) 444, 486
DpnI GATC 4 cut(s) 126, 211, 432, 813
DpnII GATC 4 cut(s) 124, 209, 430, 811
Eco130I CCWWGG 1 cut(s) 840
Eco47I GGWCC 2 cut(s) 115, 560
Eco57I CTGAAG 4 cut(s) 351, 531, 914, 935
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 4 cut(s) 63, 318, 423, 737
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 128
FatI CATG 4 cut(s) 59, 314, 419, 733
FauI CCCGC 1 cut(s) 640
FauNDI CATATG 1 cut(s) 938
Fnu4HI GCNGC 3 cut(s) 495, 672, 675
FokI GGATG 3 cut(s) 246, 425, 861
Fsp4HI GCNGC 3 cut(s) 495, 672, 675
FspBI CTAG 3 cut(s) 200, 708, 758
GluI GCNGC 3 cut(s) 495, 672, 675
HaeIII GGCC 1 cut(s) 822
HapII CCGG 2 cut(s) 263, 545
Hin1II CATG 4 cut(s) 63, 318, 423, 737
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 601, 754
HpaII CCGG 2 cut(s) 263, 545
Hpy188I TCNGA 6 cut(s) 309, 393, 430, 606, 751, 894
Hpy188III TCNNGA 3 cut(s) 113, 758, 797
HpyAV CCTTC 8 cut(s) 200, 283, 506, 708, 825, 889, 910, 916
HpyCH4III ACNGT 5 cut(s) 109, 242, 334, 592, 828
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 5 cut(s) 56, 224, 320, 677, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 263, 491, 632
HpyF3I CTNAG 2 cut(s) 444, 486
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 4 cut(s) 63, 318, 423, 737
KflI GGGWCCC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 124, 209, 430, 811
LmnI GCTCC 1 cut(s) 8
Lsp1109I GCAGC 2 cut(s) 481, 661
LweI GCATC 3 cut(s) 50, 65, 266
MaeI CTAG 3 cut(s) 200, 708, 758
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 3 cut(s) 31, 236, 886
MalI GATC 4 cut(s) 126, 211, 432, 813
MbiI CCGCTC 1 cut(s) 6
MboI GATC 4 cut(s) 124, 209, 430, 811
MboII GAAGA 1 cut(s) 348
MflI RGATCY 3 cut(s) 209, 430, 811
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 9 cut(s) 273, 323, 438, 503, 579, 583, 640, 696, 864
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 7 cut(s) 151, 399, 481, 484, 620, 802, 941
MroXI GAANNNNTTC 2 cut(s) 174, 926
MseI TTAA 2 cut(s) 299, 582
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 2 cut(s) 263, 545
MspR9I CCNGG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 70, 263, 491, 632
NciI CCSGG 1 cut(s) 546
NdeI CATATG 1 cut(s) 938
NdeII GATC 4 cut(s) 124, 209, 430, 811
NlaIII CATG 4 cut(s) 63, 318, 423, 737
NlaIV GGNNCC 3 cut(s) 116, 117, 813
NmuCI GTSAC 1 cut(s) 236
PdmI GAANNNNTTC 2 cut(s) 174, 926
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 3 cut(s) 496, 673, 676
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
PpuMI RGGWCCY 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 116, 117, 813
PspPI GGNCC 3 cut(s) 115, 560, 821
PspPPI RGGWCCY 1 cut(s) 115
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 3 cut(s) 209, 430, 811
RsaI GTAC 1 cut(s) 791
RsaNI GTAC 1 cut(s) 790
SaqAI TTAA 2 cut(s) 299, 582
SatI GCNGC 3 cut(s) 495, 672, 675
Sau3AI GATC 4 cut(s) 124, 209, 430, 811
Sau96I GGNCC 3 cut(s) 115, 560, 821
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 1 cut(s) 546
SduI GDGCHC 1 cut(s) 633
SetI ASST 9 cut(s) 22, 75, 88, 391, 459, 487, 612, 709, 719
SfaNI GCATC 3 cut(s) 50, 65, 266
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 115, 560
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 9 cut(s) 273, 323, 438, 503, 579, 583, 640, 696, 864
SsiI CCGC 4 cut(s) 6, 255, 633, 672
SspI AATATT 1 cut(s) 745
SspMI CTAG 3 cut(s) 200, 708, 758
StyD4I CCNGG 1 cut(s) 544
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 5 cut(s) 109, 242, 334, 592, 828
TaiI ACGT 1 cut(s) 88
TasI AATT 9 cut(s) 273, 323, 438, 503, 579, 583, 640, 696, 864
TatI WGTACW 1 cut(s) 789
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 299, 582
Tru9I TTAA 2 cut(s) 299, 582
TscAI CASTG 2 cut(s) 112, 633
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 494, 674
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 6 cut(s) 167, 219, 239, 392, 429, 863
TspRI CASTG 2 cut(s) 112, 633
VpaK11BI GGWCC 2 cut(s) 115, 560
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 3 cut(s) 323, 503, 696
XbaI TCTAGA 1 cut(s) 757
XmnI GAANNNNTTC 2 cut(s) 174, 926
XspI CTAG 3 cut(s) 200, 708, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.