pycom07g01560

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000709
Physical Location & Seq
Reverse (-)
1224893 .. 1226662
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01560.4

Sequence Viewer

Length: 1119 bp
ATGTGCAGAAATCATTTCCGTCGTGTAAAGGCAGAAGATGTAGCAAGGGAAGAGGTAGAAATTGTGCTATATATGGGTAGAACACAAAACACTTTCTTTTCGTTCTTTTTTTTTTTTTTTTTCTCAATCACAAAATACTTTTATTACAAGGATATTAATTACAAGTTCTTTGAGTATTTTTTTCGGATAGAGTATTTTAGTGCTGAATGGCAATTGGGATTATTTCAAGGACATATTATGAATGTTTTGTGTATGCATGCAGATGATTCAAAGAAAACAGAACATCTGCTCTCACTTGATGGAGCAAAAGAAAGGCTTCAGTTGTTCAAAGCAAATTTATTAGAAGAAGGATCTTTCGACTCTGCAGTCGATGGATGTGAAGGTGTTTTTCATACAGCATCACCTGTACAACTTTCAGCCACTGATCCGCAGACAGAACTAATTAACCCTGCAGTGAAGGGAACACTCAATGTTCTAAAATCGTGCGTAAAATTTCCTACTGTCAAGAGAGTGATTTTAACATCTTCCATGGCGGCAGTCGGGGTGAATGGAAGACCTTTGAACCCTGATGTGGTAATTGACGAAACATGGTATTCGGATCCAGCAATTTGTGAGCAGTTGAAGGAATGGTATTTTCTTTCAAAAACTTTAGCTGAGGAAGCTGCTTGGAAATTTTCAAAAGAAAATGGGATTGACTTGGTTACAATCAATCCATCATATGTGATTGGTCCGCTCCTACAGCCAACTCTTAATCTCTCTGTGGAGATGATTCTGAATCTCAAAAATGATATCCCAAGTATAATCAGTTCAAATTATCCATCTAGTGATGTCAGAGATGTTGCCTTTGCTCATGTTCAAGCATTTGAAGTCCCTTCGGCTAGTGGCAGATATTGTTTGGTTGGCCATGTTACACCCACGTCCAAGGCTCTGAGTATTTTACATGAACTCCATCCCACTTTTTTCCCACCTGAAAAATGTGATGATGACAAACCTTGTGAACCAGGCTATCAAATATCAAAGGAAAAAGCAAAAAGTTTGGGAGTTGATTTTCTTCCATTGGAAGTAAGTCTTAGGGACACTATTGAAAGCCTCAAAGAGAAGGGCTTCCTCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

373

Amino Acids

42.25

Weight (kDa)

5.47

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 733
AciI CCGC 3 cut(s) 428, 533, 731
AclWI GGATC 4 cut(s) 358, 419, 593, 606
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 3 cut(s) 334, 491, 671
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 571
AjiI CACGTC 1 cut(s) 918
AjnI CCWGG 1 cut(s) 1000
AluBI AGCT 3 cut(s) 653, 662, 1114
AluI AGCT 3 cut(s) 653, 662, 1114
AlwI GGATC 4 cut(s) 358, 419, 593, 606
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 1 cut(s) 901
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 3 cut(s) 334, 491, 671
AseI ATTAAT 1 cut(s) 156
Asp700I GAANNNNTTC 2 cut(s) 315, 1103
AspS9I GGNCC 1 cut(s) 728
AsuHPI GGTGA 2 cut(s) 393, 556
AvaII GGWCC 1 cut(s) 728
BalI TGGCCA 1 cut(s) 903
BamHI GGATCC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 559
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 649
BccI CCATC 5 cut(s) 293, 365, 721, 826, 957
BciT130I CCWGG 1 cut(s) 1002
BfaI CTAG 2 cut(s) 822, 879
BfmI CTRYAG 3 cut(s) 363, 450, 737
BisI GCNGC 2 cut(s) 534, 663
BlsI GCNGC 2 cut(s) 535, 664
Bme1390I CCNGG 1 cut(s) 1002
Bme18I GGWCC 1 cut(s) 728
BmgBI CACGTC 1 cut(s) 918
BmgT120I GGNCC 1 cut(s) 728
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 1 cut(s) 1002
BmsI GCATC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 559
Bpu10I CCTNAGC 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 1094
BsaJI CCNNGG 2 cut(s) 528, 921
BsaXI ACNNNNNCTCC 2 cut(s) 930, 960
Bsc4I CCNNNNNNNGG 1 cut(s) 571
BseBI CCWGG 1 cut(s) 1002
BseDI CCNNGG 2 cut(s) 528, 921
BseGI GGATG 2 cut(s) 380, 949
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 645, 920
BseXI GCAGC 1 cut(s) 649
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 903
BslFI GGGAC 2 cut(s) 854, 1088
BslI CCNNNNNNNGG 1 cut(s) 571
BsmFI GGGAC 2 cut(s) 854, 1088
BsnI GGCC 1 cut(s) 903
Bsp1407I TGTACA 1 cut(s) 406
Bsp143I GATC 3 cut(s) 350, 424, 598
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 3 cut(s) 428, 533, 731
BspANI GGCC 1 cut(s) 903
BspCNI CTCAG 2 cut(s) 646, 921
BspLI GGNNCC 1 cut(s) 600
BspMAI CTGCAG 2 cut(s) 367, 454
BspPI GGATC 4 cut(s) 358, 419, 593, 606
BsrBI CCGCTC 1 cut(s) 733
BsrGI TGTACA 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 528, 921
BssMI GATC 3 cut(s) 350, 424, 598
BssT1I CCWWGG 2 cut(s) 528, 921
Bst2UI CCWGG 1 cut(s) 1002
Bst4CI ACNGT 1 cut(s) 502
Bst6I CTCTTC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 654, 929, 1070
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 2 cut(s) 380, 949
BstKTI GATC 3 cut(s) 353, 427, 601
BstMBI GATC 3 cut(s) 350, 424, 598
BstMWI GCNNNNNNNGC 2 cut(s) 659, 739
BstNI CCWGG 1 cut(s) 1002
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 1000
BstSFI CTRYAG 3 cut(s) 363, 450, 737
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 559
BstX2I RGATCY 2 cut(s) 350, 598
BstYI RGATCY 2 cut(s) 350, 598
BsuRI GGCC 1 cut(s) 903
BtgI CCRYGG 1 cut(s) 528
BtrI CACGTC 1 cut(s) 918
BtsCI GGATG 2 cut(s) 380, 949
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 420, 459
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 728
Csp6I GTAC 1 cut(s) 407
CviAII CATG 6 cut(s) 257, 529, 588, 851, 905, 941
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 3 cut(s) 654, 929, 1070
DpnI GATC 3 cut(s) 352, 426, 600
DpnII GATC 3 cut(s) 350, 424, 598
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 528, 921
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 1000
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 2 cut(s) 528, 921
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 528, 921
FaeI CATG 6 cut(s) 260, 532, 591, 854, 908, 944
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 1053, 1085
FaqI GGGAC 2 cut(s) 854, 1088
FatI CATG 6 cut(s) 256, 528, 587, 850, 904, 940
FauNDI CATATG 1 cut(s) 718
Fnu4HI GCNGC 2 cut(s) 534, 663
FokI GGATG 2 cut(s) 387, 936
Fsp4HI GCNGC 2 cut(s) 534, 663
FspBI CTAG 2 cut(s) 822, 879
GluI GCNGC 2 cut(s) 534, 663
HaeIII GGCC 1 cut(s) 903
Hin1II CATG 6 cut(s) 260, 532, 591, 854, 908, 944
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 4 cut(s) 266, 359, 769, 775
HphI GGTGA 2 cut(s) 393, 556
Hpy166II GTNNAC 1 cut(s) 998
Hpy188I TCNGA 5 cut(s) 186, 598, 774, 833, 930
Hpy188III TCNNGA 1 cut(s) 505
Hpy8I GTNNAC 1 cut(s) 998
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 6 cut(s) 341, 374, 451, 616, 882, 1093
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 5 cut(s) 6, 256, 260, 365, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 739
HpyF3I CTNAG 3 cut(s) 654, 929, 1070
HpySE526I ACGT 1 cut(s) 917
Hsp92II CATG 6 cut(s) 260, 532, 591, 854, 908, 944
Kzo9I GATC 3 cut(s) 350, 424, 598
LmnI GCTCC 2 cut(s) 302, 738
LpnPI CCDG 7 cut(s) 417, 462, 579, 615, 981, 987, 1014
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 1 cut(s) 407
MaeI CTAG 2 cut(s) 822, 879
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 2 cut(s) 700, 907
MalI GATC 3 cut(s) 352, 426, 600
MbiI CCGCTC 1 cut(s) 733
MboI GATC 3 cut(s) 350, 424, 598
MboII GAAGA 6 cut(s) 47, 62, 356, 516, 564, 1043
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 2 cut(s) 350, 598
MlsI TGGCCA 1 cut(s) 903
MluNI TGGCCA 1 cut(s) 903
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 4 cut(s) 46, 649, 1100, 1118
Mox20I TGGCCA 1 cut(s) 903
Mph1103I ATGCAT 1 cut(s) 258
MroXI GAANNNNTTC 2 cut(s) 315, 1103
MscI TGGCCA 1 cut(s) 903
MseI TTAA 4 cut(s) 156, 444, 518, 750
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 903
MspR9I CCNGG 1 cut(s) 1002
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 1002
MwoI GCNNNNNNNGC 2 cut(s) 659, 739
NcoI CCATGG 1 cut(s) 528
NdeI CATATG 1 cut(s) 718
NdeII GATC 3 cut(s) 350, 424, 598
NlaIII CATG 6 cut(s) 260, 532, 591, 854, 908, 944
NlaIV GGNNCC 1 cut(s) 600
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 1 cut(s) 260
PaeI GCATGC 1 cut(s) 260
PdmI GAANNNNTTC 2 cut(s) 315, 1103
PfeI GAWTC 3 cut(s) 266, 769, 775
PkrI GCNGC 2 cut(s) 535, 664
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 1000
PspGI CCWGG 1 cut(s) 1000
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 1 cut(s) 728
PsrI GAACNNNNNNTAC 2 cut(s) 790, 822
PstI CTGCAG 2 cut(s) 367, 454
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 350, 598
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 4 cut(s) 156, 444, 518, 750
SatI GCNGC 2 cut(s) 534, 663
Sau3AI GATC 3 cut(s) 350, 424, 598
Sau96I GGNCC 1 cut(s) 728
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 1002
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 3 cut(s) 363, 450, 737
SinI GGWCC 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
SphI GCATGC 1 cut(s) 260
SsiI CCGC 3 cut(s) 428, 533, 731
SspMI CTAG 2 cut(s) 822, 879
StyD4I CCNGG 1 cut(s) 1000
StyI CCWWGG 2 cut(s) 528, 921
TaaI ACNGT 1 cut(s) 502
TaiI ACGT 1 cut(s) 920
TaqI TCGA 2 cut(s) 357, 369
TatI WGTACW 1 cut(s) 406
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 3 cut(s) 266, 769, 775
Tru1I TTAA 4 cut(s) 156, 444, 518, 750
Tru9I TTAA 4 cut(s) 156, 444, 518, 750
TscAI CASTG 2 cut(s) 427, 459
TseI GCWGC 1 cut(s) 662
TspDTI ATGAA 3 cut(s) 254, 380, 957
TspGWI ACGGA 1 cut(s) 8
TspRI CASTG 2 cut(s) 427, 459
VpaK11BI GGWCC 1 cut(s) 728
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 3 cut(s) 334, 491, 671
XceI RCATGY 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 315, 1103
XspI CTAG 2 cut(s) 822, 879
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.