Prupe.2G021500_v2.0.a1

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000709
Physical Location & Seq
Reverse (-)
2094729 .. 2101092
6364 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G021500.3

Sequence Viewer

Length: 1038 bp
ATGCTAGCACCCATCTTCTCTCCAAGCTTCCTTATTCTCCTATTATCTTCCATTCTTGGTGAAGATTCTTTTAGGAGGTGCATCCTTAGTGTGCCTATTTGGAGATCAAGTGTGGAGAATCAAAATCTAAGGGACCAATCTCTGTACTTGAACACCATACTTGGTTTCAAGATTTGCTCTAAGGATGATCCAAAGAAAACAGAACACTTGCTCTCACTGGATGGAGCAAAAGAGAGGCTTCATTTGTTCAAAGCAGATTTGATACAAGAAGGATCTTTTGACACTGTAGTCGATGGATGTGAAGGTGTTTTTCATACAGCATCCCCTGTACAATTTTCGGCTACTGACCCACAGGCAGAAATAGTTGACCCTGCAGTGAATGGAACACTCAATGTTCTCAAATCATGCGTGAAATTTTCTACTGTCAAGAGAGTGGTTTTAACATCTTCTATGGCTTCAGTAATGCTGAGTGGAAAACCTCTGACCTCTGATGTGGTAATTGATGAAACATGTTATTCAGATCAAGTTGTTTGTGAGAACCACAAGCAATGGTATATGCTCTCAAAAACTTTAGCTGAGAAGGCTGCCTGGGAATATGCTAAAGGAAATGGGATTGACTTGGTTATAATGAATCCAGGGTTTGTGATTGGTCCACTCTTACAGCCAACTCTTAATCTCTCTGTGGAGCTGATTCAGAATCTCATAAGTGGCACCCAAACAACACCTGTTTCAAATTACAGATTCATTGATGTTAGAGATGTTGCCTCTGCTCATATTCAAGCATTTGAAGTTCCTTCAGCTGCTGGAAGATATTGTTTAGTGGGCCATGTTGCAAGCGTTTCCAAGACTCTGAAGATTTTACGACAACTTTATCCCACTTTGCTTTCTGAAAAATGTGAAGTAGGCGCTCCTCCGGAGCCAACATATCAAGTATCCGTGGAGAAAGCAAAAGGTTTAGGAATTACTTTCCTTCCTTTGGAAGTAAGTCTTAGGGACACTGTTGAAAGCCTGAAGGAGAAAGGCTTCCTCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

346

Amino Acids

37.88

Weight (kDa)

5.92

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AasI GACNNNNNNGTC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 710
AccIII TCCGGA 1 cut(s) 913
AclWI GGATC 2 cut(s) 182, 280
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 4 cut(s) 441, 780, 872, 1031
AfaI GTAC 2 cut(s) 146, 330
AfiI CCNNNNNNNGG 1 cut(s) 976
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 7 cut(s) 151, 169, 250, 732, 779, 788, 1004
AjnI CCWGG 2 cut(s) 587, 634
AluBI AGCT 4 cut(s) 27, 575, 688, 800
AluI AGCT 4 cut(s) 27, 575, 688, 800
AlwI GGATC 2 cut(s) 182, 280
AlwNI CAGNNNCTG 1 cut(s) 803
Aor13HI TCCGGA 1 cut(s) 913
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 2 cut(s) 584, 800
ApoI RAATTY 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 1022
AspLEI GCGC 1 cut(s) 908
AspS9I GGNCC 3 cut(s) 133, 650, 823
AsuHPI GGTGA 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 4
AvaII GGWCC 2 cut(s) 133, 650
BanI GGYRCC 1 cut(s) 710
BbvI GCAGC 2 cut(s) 571, 787
BccI CCATC 3 cut(s) 20, 215, 287
BciT130I CCWGG 2 cut(s) 589, 636
BciVI GTATCC 1 cut(s) 943
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 2 cut(s) 285, 372
BfoI RGCGCY 1 cut(s) 909
BfuI GTATCC 1 cut(s) 943
BisI GCNGC 2 cut(s) 585, 801
BlsI GCNGC 2 cut(s) 586, 802
Bme1390I CCNGG 2 cut(s) 589, 636
Bme18I GGWCC 2 cut(s) 133, 650
BmgT120I GGNCC 3 cut(s) 133, 650, 823
BmiI GGNNCC 3 cut(s) 134, 712, 918
BmrFI CCNGG 2 cut(s) 589, 636
BmsI GCATC 2 cut(s) 90, 329
BmtI GCTAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 1013
BsaJI CCNNGG 3 cut(s) 588, 635, 936
BsaWI WCCGGW 1 cut(s) 913
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 976
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 554
BseAI TCCGGA 1 cut(s) 913
BseBI CCWGG 2 cut(s) 589, 636
BseDI CCNNGG 3 cut(s) 588, 635, 936
BseGI GGATG 5 cut(s) 81, 190, 226, 302, 320
BseLI CCNNNNNNNGG 1 cut(s) 976
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 2 cut(s) 458, 567
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 900
BseXI GCAGC 2 cut(s) 571, 787
BshFI GGCC 1 cut(s) 825
BshNI GGYRCC 1 cut(s) 710
BsiSI CCGG 1 cut(s) 914
BslFI GGGAC 2 cut(s) 146, 1007
BslI CCNNNNNNNGG 1 cut(s) 976
BsmFI GGGAC 2 cut(s) 146, 1007
BsnI GGCC 1 cut(s) 825
Bsp13I TCCGGA 1 cut(s) 913
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 4 cut(s) 104, 187, 272, 520
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 2 cut(s) 459, 568
BspEI TCCGGA 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 134, 712, 918
BspMAI CTGCAG 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 182, 280
BspT107I GGYRCC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 554
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 3 cut(s) 588, 635, 936
BssMI GATC 4 cut(s) 104, 187, 272, 520
Bst2UI CCWGG 2 cut(s) 589, 636
Bst4CI ACNGT 3 cut(s) 286, 424, 1000
BstAUI TGTACA 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 6, 835
BstDEI CTNAG 6 cut(s) 86, 128, 180, 467, 576, 989
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 5 cut(s) 81, 190, 226, 302, 320
BstH2I RGCGCY 1 cut(s) 909
BstHHI GCGC 1 cut(s) 908
BstKTI GATC 4 cut(s) 107, 190, 275, 523
BstMBI GATC 4 cut(s) 104, 187, 272, 520
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 2 cut(s) 589, 636
BstNSI RCATGY 1 cut(s) 513
BstSCI CCNGG 2 cut(s) 587, 634
BstSFI CTRYAG 2 cut(s) 285, 372
BstV1I GCAGC 2 cut(s) 571, 787
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 1 cut(s) 825
BtgI CCRYGG 1 cut(s) 936
BtsCI GGATG 5 cut(s) 81, 190, 226, 302, 320
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 4 cut(s) 215, 282, 381, 996
Cac8I GCNNGC 2 cut(s) 6, 835
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 1 cut(s) 908
Cfr13I GGNCC 3 cut(s) 133, 650, 823
Csp6I GTAC 2 cut(s) 145, 329
CviAII CATG 3 cut(s) 405, 510, 827
CviQI GTAC 2 cut(s) 145, 329
DdeI CTNAG 6 cut(s) 86, 128, 180, 467, 576, 989
DpnI GATC 4 cut(s) 106, 189, 274, 522
DpnII GATC 4 cut(s) 104, 187, 272, 520
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 133, 650
Eco57I CTGAAG 4 cut(s) 441, 780, 872, 1031
EcoRII CCWGG 2 cut(s) 587, 634
FaeI CATG 3 cut(s) 408, 513, 830
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 972, 1004
FaqI GGGAC 2 cut(s) 146, 1007
FatI CATG 3 cut(s) 404, 509, 826
Fnu4HI GCNGC 2 cut(s) 585, 801
FokI GGATG 5 cut(s) 68, 197, 233, 307, 309
Fsp4HI GCNGC 2 cut(s) 585, 801
FspBI CTAG 1 cut(s) 5
GlaI GCGC 1 cut(s) 907
GluI GCNGC 2 cut(s) 585, 801
HaeII RGCGCY 1 cut(s) 909
HaeIII GGCC 1 cut(s) 825
HapII CCGG 1 cut(s) 914
HhaI GCGC 1 cut(s) 908
Hin1II CATG 3 cut(s) 408, 513, 830
Hin6I GCGC 1 cut(s) 906
HinP1I GCGC 1 cut(s) 906
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 7 cut(s) 65, 118, 631, 691, 697, 741, 847
HpaII CCGG 1 cut(s) 914
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 367, 653
Hpy188I TCNGA 6 cut(s) 483, 490, 520, 696, 852, 889
Hpy188III TCNNGA 4 cut(s) 169, 427, 914, 1030
Hpy8I GTNNAC 2 cut(s) 367, 653
HpyAV CCTTC 6 cut(s) 263, 296, 574, 804, 980, 1006
HpyCH4III ACNGT 3 cut(s) 286, 424, 1000
HpyCH4V TGCA 3 cut(s) 81, 374, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 6 cut(s) 86, 128, 180, 467, 576, 989
Hsp92II CATG 3 cut(s) 408, 513, 830
HspAI GCGC 1 cut(s) 906
Kpn2I TCCGGA 1 cut(s) 913
Kzo9I GATC 4 cut(s) 104, 187, 272, 520
LmnI GCTCC 4 cut(s) 224, 685, 913, 916
Lsp1109I GCAGC 2 cut(s) 571, 787
LweI GCATC 2 cut(s) 90, 329
MaeI CTAG 1 cut(s) 5
MalI GATC 4 cut(s) 106, 189, 274, 522
MboI GATC 4 cut(s) 104, 187, 272, 520
MboII GAAGA 6 cut(s) 7, 39, 74, 438, 819, 865
MflI RGATCY 1 cut(s) 272
MluCI AATT 5 cut(s) 332, 413, 498, 733, 960
MlyI GAGTC 1 cut(s) 841
MnlI CCTC 7 cut(s) 69, 228, 489, 496, 775, 921, 1037
MroI TCCGGA 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 1022
MseI TTAA 2 cut(s) 440, 672
MspA1I CMGCKG 1 cut(s) 800
MspI CCGG 1 cut(s) 914
MspR9I CCNGG 2 cut(s) 589, 636
MvaI CCWGG 2 cut(s) 589, 636
MwoI GCNNNNNNNGC 1 cut(s) 581
NdeII GATC 4 cut(s) 104, 187, 272, 520
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 3 cut(s) 408, 513, 830
NlaIV GGNNCC 3 cut(s) 134, 712, 918
NspI RCATGY 1 cut(s) 513
PciI ACATGT 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 1022
PfeI GAWTC 6 cut(s) 65, 118, 631, 691, 697, 741
PkrI GCNGC 2 cut(s) 586, 802
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
PscI ACATGT 1 cut(s) 509
PsiI TTATAA 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 587, 634
PspGI CCWGG 2 cut(s) 587, 634
PspN4I GGNNCC 3 cut(s) 134, 712, 918
PspPI GGNCC 3 cut(s) 133, 650, 823
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 2 cut(s) 146, 330
RsaNI GTAC 2 cut(s) 145, 329
SaqAI TTAA 2 cut(s) 440, 672
SatI GCNGC 2 cut(s) 585, 801
Sau3AI GATC 4 cut(s) 104, 187, 272, 520
Sau96I GGNCC 3 cut(s) 133, 650, 823
SchI GAGTC 1 cut(s) 841
ScrFI CCNGG 2 cut(s) 589, 636
SfaNI GCATC 2 cut(s) 90, 329
SfcI CTRYAG 2 cut(s) 285, 372
SinI GGWCC 2 cut(s) 133, 650
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
Sse9I AATT 5 cut(s) 332, 413, 498, 733, 960
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 587, 634
TaaI ACNGT 3 cut(s) 286, 424, 1000
TaqI TCGA 1 cut(s) 291
TasI AATT 5 cut(s) 332, 413, 498, 733, 960
TatI WGTACW 2 cut(s) 144, 328
TfiI GAWTC 6 cut(s) 65, 118, 631, 691, 697, 741
Tru1I TTAA 2 cut(s) 440, 672
Tru9I TTAA 2 cut(s) 440, 672
TscAI CASTG 4 cut(s) 222, 289, 381, 1003
TseI GCWGC 2 cut(s) 584, 800
TspDTI ATGAA 5 cut(s) 230, 302, 519, 644, 733
TspGWI ACGGA 1 cut(s) 925
TspRI CASTG 4 cut(s) 222, 289, 381, 1003
VpaK11BI GGWCC 2 cut(s) 133, 650
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 1022
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.