Rmu_sc0003374.1_g000006

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003374.1
OG0000709
Physical Location & Seq
Reverse (-)
43907 .. 49252
5346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003374.1_g000006.1.cds

Sequence Viewer

Length: 1245 bp
atgcgaagctccagaaggtcgcctccgctgtttagccatttcaattctcccgtcgctgtcgttgctcctctcaactcagttcggtttgagatcaatcctcttgatctgggacatggcactgatggcagagttgtggcagatggagatgtctgtcaccgtggaactgattttgctacccagaaactccagagtaccagaatgactgacagaagtcacagaagtgcagaactgcagtttggaaaacagggaaaacaggcaaatcttgttgaactggaaattgggccggaaaaagaccgaaaagcccgaaagaccgaaccggcccgaataggggcatctggttatattgcatcatggctggtcaagcttttgctacaacgtggttatattgtcaaaggcactgttcgggacccaaacgatcccaaaaaaacagaacacttactttcacttgagggggcaaaagaaaggcttcatttgttcaaagcagatttgctagatgaaggatcttttgaccctgcagttgatggatgtgactgtgtttttcataccgcatctccggcagaactaattgaccctgctgtgaagggaacattaaatgttctgaaatcatgtgcaaaatttccaaccgtcaagcgagtggttttgacatcttctttggcttcagtaatgatgaatggaaaacctctgacccctgatgttgtagtggatgaaacatggtattcagatccactaattgctgagaagcacaagctgtggtatattctttcaaagactttagctgaggaggctgcttggaaatttgctgaaggaaataggattgacttggtttcaataaatccggggtttgtgattggaccactcttacagccgacaattaatttgacggtggagatgattcagaacctcataactggcaaagcagtgccagcttcaaattacagatttattgatgttagagatgttgccgctgcacatattcaagcatttgaaattctttcagctagtggaaggtattgtttggtcagccatgttgcaaatatttccgagactctagagatgatacgacaactttatcccaccatgtacattcctgaaagatgtgaggatgtcaaattgaatccttctggcccacagtttcaagtatccaaggagaaagcaaaaggtctgggaattagttttcatccattggaagtaactctgaaggacactattgaaagcctgaaggagaagggtttcctcaacatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

414

Amino Acids

45.75

Weight (kDa)

8.11

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 26, 546, 963
AclWI GGATC 3 cut(s) 410, 508, 716
AcsI RAATTY 3 cut(s) 614, 794, 987
AcuI CTGAAG 4 cut(s) 642, 822, 1217, 1238
AfaI GTAC 2 cut(s) 193, 1082
AfiI CCNNNNNNNGG 2 cut(s) 327, 328
AjuI GAANNNNNNNTTGG 4 cut(s) 219, 251, 261, 293
AleI CACNNNNGTG 1 cut(s) 219
AluBI AGCT 6 cut(s) 9, 364, 748, 776, 926, 998
AluI AGCT 6 cut(s) 9, 364, 748, 776, 926, 998
Alw26I GTCTC 1 cut(s) 1037
AlwI GGATC 3 cut(s) 410, 508, 716
AoxI GGCC 3 cut(s) 281, 318, 1123
ApeKI GCWGC 2 cut(s) 785, 965
ApoI RAATTY 3 cut(s) 614, 794, 987
ArsI GACNNNNNNTTYG 4 cut(s) 634, 666, 859, 891
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 2 cut(s) 465, 1229
AspS9I GGNCC 5 cut(s) 281, 319, 406, 851, 1124
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 2 cut(s) 406, 851
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 772, 952
BccI CCATC 3 cut(s) 116, 134, 515
BciVI GTATCC 1 cut(s) 1150
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 1 cut(s) 1037
BfaI CTAG 3 cut(s) 491, 999, 1049
BfmI CTRYAG 2 cut(s) 230, 513
BfuI GTATCC 1 cut(s) 1150
BisI GCNGC 3 cut(s) 786, 963, 966
BlsI GCNGC 3 cut(s) 787, 964, 967
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 2 cut(s) 406, 851
BmgT120I GGNCC 5 cut(s) 281, 319, 406, 851, 1124
BmiI GGNNCC 2 cut(s) 407, 408
BmrFI CCNGG 1 cut(s) 837
BmsI GCATC 3 cut(s) 341, 356, 557
BoxI GACNNNNGTC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 157, 836, 1143
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 328
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 276, 913
BseDI CCNNGG 3 cut(s) 157, 836, 1143
BseGI GGATG 4 cut(s) 530, 709, 1108, 1177
BseLI CCNNNNNNNGG 2 cut(s) 327, 328
BseMII CTCAG 3 cut(s) 90, 726, 768
BseNI ACTGG 2 cut(s) 276, 913
BseRI GAGGAG 2 cut(s) 57, 794
BseXI GCAGC 2 cut(s) 772, 952
BsgI GTGCAG 2 cut(s) 243, 951
BshFI GGCC 3 cut(s) 283, 320, 1125
BsiSI CCGG 4 cut(s) 284, 317, 554, 836
BslFI GGGAC 2 cut(s) 123, 419
BslI CCNNNNNNNGG 2 cut(s) 327, 328
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 2 cut(s) 123, 419
BsnI GGCC 3 cut(s) 283, 320, 1125
Bsp1407I TGTACA 1 cut(s) 1080
Bsp143I GATC 5 cut(s) 90, 103, 415, 500, 721
BspACI CCGC 3 cut(s) 26, 546, 963
BspANI GGCC 3 cut(s) 283, 320, 1125
BspCNI CTCAG 3 cut(s) 89, 727, 769
BspLI GGNNCC 2 cut(s) 407, 408
BspMAI CTGCAG 2 cut(s) 234, 517
BspPI GGATC 3 cut(s) 410, 508, 716
BsrFI RCCGGY 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 1080
BsrI ACTGG 2 cut(s) 276, 913
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 157, 836, 1143
BssMI GATC 5 cut(s) 90, 103, 415, 500, 721
BssT1I CCWWGG 1 cut(s) 1143
Bst4CI ACNGT 6 cut(s) 158, 400, 533, 625, 883, 1131
BstAUI TGTACA 1 cut(s) 1080
BstC8I GCNNGC 1 cut(s) 924
BstDEI CTNAG 3 cut(s) 76, 735, 777
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 4 cut(s) 530, 709, 1108, 1177
BstKTI GATC 5 cut(s) 93, 106, 418, 503, 724
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 5 cut(s) 90, 103, 415, 500, 721
BstMWI GCNNNNNNNGC 6 cut(s) 62, 123, 361, 554, 782, 923
BstPAI GACNNNNGTC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 835
BstSFI CTRYAG 2 cut(s) 230, 513
BstV1I GCAGC 2 cut(s) 772, 952
BstX2I RGATCY 2 cut(s) 500, 721
BstYI RGATCY 2 cut(s) 500, 721
BsuI GTATCC 1 cut(s) 1150
BsuRI GGCC 3 cut(s) 283, 320, 1125
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 530, 709, 1108, 1177
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 3 cut(s) 117, 396, 924
Cac8I GCNNGC 1 cut(s) 924
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 5 cut(s) 281, 319, 406, 851, 1124
Csp6I GTAC 2 cut(s) 192, 1081
CviAII CATG 6 cut(s) 113, 351, 606, 711, 1025, 1078
CviQI GTAC 2 cut(s) 192, 1081
DdeI CTNAG 3 cut(s) 76, 735, 777
DpnI GATC 5 cut(s) 92, 105, 417, 502, 723
DpnII GATC 5 cut(s) 90, 103, 415, 500, 721
Eco130I CCWWGG 1 cut(s) 1143
Eco47I GGWCC 2 cut(s) 406, 851
Eco57I CTGAAG 4 cut(s) 642, 822, 1217, 1238
EcoO109I RGGNCCY 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 1143
ErhI CCWWGG 1 cut(s) 1143
FaeI CATG 6 cut(s) 116, 354, 609, 714, 1028, 1081
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 2 cut(s) 123, 419
FatI CATG 6 cut(s) 112, 350, 605, 710, 1024, 1077
FauNDI CATATG 1 cut(s) 1241
Fnu4HI GCNGC 3 cut(s) 786, 963, 966
FokI GGATG 4 cut(s) 537, 716, 1115, 1164
Fsp4HI GCNGC 3 cut(s) 786, 963, 966
FspBI CTAG 3 cut(s) 491, 999, 1049
GluI GCNGC 3 cut(s) 786, 963, 966
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 3 cut(s) 283, 320, 1125
HapII CCGG 4 cut(s) 284, 317, 554, 836
Hin1II CATG 6 cut(s) 116, 354, 609, 714, 1028, 1081
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 3 cut(s) 892, 1045, 1114
HpaII CCGG 4 cut(s) 284, 317, 554, 836
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 6 cut(s) 600, 684, 721, 897, 1042, 1197
Hpy188III TCNNGA 6 cut(s) 12, 101, 187, 404, 1049, 1088
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 9 cut(s) 9, 491, 574, 797, 999, 1128, 1192, 1213, 1219
HpyCH4III ACNGT 6 cut(s) 158, 400, 533, 625, 883, 1131
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 7 cut(s) 224, 232, 347, 515, 611, 968, 1031
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 123, 361, 554, 782, 923
HpyF3I CTNAG 3 cut(s) 76, 735, 777
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 6 cut(s) 116, 354, 609, 714, 1028, 1081
KflI GGGWCCC 1 cut(s) 406
Kzo9I GATC 5 cut(s) 90, 103, 415, 500, 721
LmnI GCTCC 2 cut(s) 14, 70
Lsp1109I GCAGC 2 cut(s) 772, 952
LweI GCATC 3 cut(s) 341, 356, 557
MaeI CTAG 3 cut(s) 491, 999, 1049
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 4 cut(s) 152, 212, 527, 1189
MalI GATC 5 cut(s) 92, 105, 417, 502, 723
MboI GATC 5 cut(s) 90, 103, 415, 500, 721
MboII GAAGA 1 cut(s) 639
MflI RGATCY 2 cut(s) 500, 721
MlyI GAGTC 1 cut(s) 1039
MmeI TCCRAC 1 cut(s) 644
MroXI GAANNNNTTC 2 cut(s) 465, 1229
MseI TTAA 2 cut(s) 590, 873
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 2 cut(s) 28, 965
MspI CCGG 4 cut(s) 284, 317, 554, 836
MspR9I CCNGG 1 cut(s) 837
MwoI GCNNNNNNNGC 6 cut(s) 62, 123, 361, 554, 782, 923
NciI CCSGG 1 cut(s) 837
NdeI CATATG 1 cut(s) 1241
NdeII GATC 5 cut(s) 90, 103, 415, 500, 721
NlaIII CATG 6 cut(s) 116, 354, 609, 714, 1028, 1081
NlaIV GGNNCC 2 cut(s) 407, 408
NmuCI GTSAC 3 cut(s) 152, 212, 527
OliI CACNNNNGTG 1 cut(s) 219
PdmI GAANNNNTTC 2 cut(s) 465, 1229
PfeI GAWTC 2 cut(s) 892, 1114
PkrI GCNGC 3 cut(s) 787, 964, 967
PleI GAGTC 1 cut(s) 1039
PpsI GAGTC 1 cut(s) 1039
PpuMI RGGWCCY 1 cut(s) 406
PshAI GACNNNNGTC 1 cut(s) 210
PshBI ATTAAT 1 cut(s) 873
Psp5II RGGWCCY 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 407, 408
PspPI GGNCC 5 cut(s) 281, 319, 406, 851, 1124
PspPPI RGGWCCY 1 cut(s) 406
PstI CTGCAG 2 cut(s) 234, 517
PsuI RGATCY 2 cut(s) 500, 721
RsaI GTAC 2 cut(s) 193, 1082
RsaNI GTAC 2 cut(s) 192, 1081
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 2 cut(s) 590, 873
SatI GCNGC 3 cut(s) 786, 963, 966
Sau3AI GATC 5 cut(s) 90, 103, 415, 500, 721
Sau96I GGNCC 5 cut(s) 281, 319, 406, 851, 1124
SchI GAGTC 1 cut(s) 1039
ScrFI CCNGG 1 cut(s) 837
SfaNI GCATC 3 cut(s) 341, 356, 557
SfcI CTRYAG 2 cut(s) 230, 513
SinI GGWCC 2 cut(s) 406, 851
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 3 cut(s) 26, 546, 963
SspI AATATT 1 cut(s) 1036
SspMI CTAG 3 cut(s) 491, 999, 1049
StyD4I CCNGG 1 cut(s) 835
StyI CCWWGG 1 cut(s) 1143
TaaI ACNGT 6 cut(s) 158, 400, 533, 625, 883, 1131
TaiI ACGT 1 cut(s) 379
TaqII GACCGA 2 cut(s) 309, 326
TatI WGTACW 1 cut(s) 1080
TauI GCSGC 1 cut(s) 965
TfiI GAWTC 2 cut(s) 892, 1114
Tru1I TTAA 2 cut(s) 590, 873
Tru9I TTAA 2 cut(s) 590, 873
TscAI CASTG 3 cut(s) 124, 403, 924
TseFI GTSAC 3 cut(s) 152, 212, 527
TseI GCWGC 2 cut(s) 785, 965
Tsp45I GTSAC 3 cut(s) 152, 212, 527
TspDTI ATGAA 6 cut(s) 458, 510, 530, 683, 720, 1166
TspRI CASTG 3 cut(s) 124, 403, 924
VpaK11BI GGWCC 2 cut(s) 406, 851
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 3 cut(s) 614, 794, 987
XbaI TCTAGA 1 cut(s) 1048
XmnI GAANNNNTTC 2 cut(s) 465, 1229
XspI CTAG 3 cut(s) 491, 999, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.