Rroxscaffold_4G00330280

reductase 1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
63879319 .. 63885524
6206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330280.1

Sequence Viewer

Length: 816 bp
ATGCGACGTCATGCAGATGATGCAAAGAAAACAGAACACTTGCTTTCACTTGATGGAGCTAAGGAAAGGCTTCATCTGTTCAAAGCAGATTTATTAGAAGAAGGATCTTTTGACCCTGTCGTTGATGGATGCGAAGGTGTTTTCCATACAGCATCCCCTGTCCTATTGTCATCTACTAATCCGCAGGCAGAACTAATAGACCCTGCAGTAAAGGGAACACATAATGTTCTGAAATCATGTGCAAAATTTCCGACTGTCAAGAGAGTGGTTTTAACTTCTTCTATGGCTGCAGTAATATTGACCGGAAAACCTCTGACCTCAGATGTGGTAGTTGATGAAACATGGTTTTCGGATCCACTTTTTTGTGAGAAGAATAAGCTATGGTATATTCTTTCAAAAACTATAGCTGAGGATGCCGCTTGGAAATTCGCCAAGGAAAATGGGATTGATCTGGTTTCAATAAATCCAGGGTTTGTGATTGGTCCGTTGTTACAGCCGACTCTCAATCTCTCTGTGGAAGTGATTCAGAGTCTCCTAACTGGCAAGGCATTGCCCGCTTCAAATTACAGATTCGTTGACGTTAGAGATGTTGCCTCTGCGCATATTCAAGCCTTTGAAGTTCCTTCAGCCAGTGGAAGGTATTGTTTGGTCAGCCATGTTGCACACATTTCCGAGGTTCTGAAGATTATAAGACAATTTTATCCCACTTTGTACATTCCGGAAAGTAAGACAGTCTCCCCTAAGCGCAACTCCACTAGCAGACTTCTTCTTTCATCTTGCAAGCGAGACAGTCTCCACCGAACGCAACTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

271

Amino Acids

29.93

Weight (kDa)

8.53

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 17 - 210 5.6e-13 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 22 - 204 2.4e-12 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 30 - 165 6.5e-08 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AatII GACGTC 1 cut(s) 10
Acc16I TGCGCA 1 cut(s) 600
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 4 cut(s) 182, 417, 555, 811
AclWI GGATC 3 cut(s) 112, 347, 360
AcsI RAATTY 2 cut(s) 245, 425
AcuI CTGAAG 2 cut(s) 609, 701
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 636
AgsI TTSAA 6 cut(s) 82, 396, 459, 561, 608, 617
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 3 cut(s) 59, 379, 407
AluI AGCT 3 cut(s) 59, 379, 407
Alw26I GTCTC 4 cut(s) 536, 739, 780, 797
AlwI GGATC 3 cut(s) 112, 347, 360
Aor13HI TCCGGA 1 cut(s) 718
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 2 cut(s) 245, 425
Asp700I GAANNNNTTC 2 cut(s) 69, 522
AspLEI GCGC 2 cut(s) 601, 747
AspS9I GGNCC 1 cut(s) 482
AvaII GGWCC 1 cut(s) 482
BamHI GGATCC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 274
BccI CCATC 2 cut(s) 47, 119
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 4 cut(s) 536, 739, 780, 797
BfaI CTAG 2 cut(s) 756, 814
BfmI CTRYAG 3 cut(s) 204, 288, 402
BisI GCNGC 2 cut(s) 288, 417
BlsI GCNGC 2 cut(s) 289, 418
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 4 cut(s) 10, 119, 161, 403
BplI GAGNNNNNCTC 2 cut(s) 777, 809
Bpu10I CCTNAGC 3 cut(s) 60, 408, 741
BsaHI GRCGYC 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 432, 467, 672
BsaWI WCCGGW 2 cut(s) 302, 718
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse1I ACTGG 2 cut(s) 544, 630
Bse3DI GCAATG 1 cut(s) 548
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 3 cut(s) 432, 467, 672
BseGI GGATG 3 cut(s) 134, 152, 418
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 2 cut(s) 333, 399
BseNI ACTGG 2 cut(s) 544, 630
BseXI GCAGC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 303, 719
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 4 cut(s) 536, 739, 780, 797
Bsp13I TCCGGA 1 cut(s) 718
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 3 cut(s) 104, 352, 448
BspACI CCGC 4 cut(s) 182, 417, 555, 811
BspCNI CTCAG 2 cut(s) 332, 400
BspEI TCCGGA 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 354
BspMAI CTGCAG 2 cut(s) 208, 292
BspPI GGATC 3 cut(s) 112, 347, 360
BsrDI GCAATG 1 cut(s) 548
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 2 cut(s) 544, 630
BssECI CCNNGG 3 cut(s) 432, 467, 672
BssMI GATC 3 cut(s) 104, 352, 448
BssNI GRCGYC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 256, 733, 791
BstACI GRCGYC 1 cut(s) 7
BstAPI GCANNNNNTGC 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 186, 555, 782
BstDEI CTNAG 4 cut(s) 60, 319, 408, 741
BstF5I GGATG 3 cut(s) 134, 152, 418
BstHHI GCGC 2 cut(s) 601, 747
BstKTI GATC 3 cut(s) 107, 355, 451
BstMAI GTCTC 4 cut(s) 536, 739, 780, 797
BstMBI GATC 3 cut(s) 104, 352, 448
BstMWI GCNNNNNNNGC 3 cut(s) 20, 413, 554
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 3 cut(s) 204, 288, 402
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 2 cut(s) 104, 352
BstYI RGATCY 2 cut(s) 104, 352
BtsCI GGATG 3 cut(s) 134, 152, 418
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 3 cut(s) 186, 555, 782
CfoI GCGC 2 cut(s) 601, 747
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 712
CviAII CATG 4 cut(s) 11, 237, 342, 656
CviJI RGCY 9 cut(s) 59, 70, 287, 379, 407, 496, 611, 629, 654
CviKI_1 RGCY 9 cut(s) 59, 70, 287, 379, 407, 496, 611, 629, 654
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 4 cut(s) 60, 319, 408, 741
DpnI GATC 3 cut(s) 106, 354, 450
DpnII GATC 3 cut(s) 104, 352, 448
Eco130I CCWWGG 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 482
Eco57I CTGAAG 2 cut(s) 609, 701
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 4 cut(s) 14, 240, 345, 659
FatI CATG 4 cut(s) 10, 236, 341, 655
FauI CCCGC 1 cut(s) 562
Fnu4HI GCNGC 2 cut(s) 288, 417
FokI GGATG 3 cut(s) 139, 141, 425
Fsp4HI GCNGC 2 cut(s) 288, 417
FspBI CTAG 2 cut(s) 756, 814
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 2 cut(s) 600, 746
GluI GCNGC 2 cut(s) 288, 417
HapII CCGG 2 cut(s) 303, 719
HhaI GCGC 2 cut(s) 601, 747
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 4 cut(s) 14, 240, 345, 659
Hin6I GCGC 2 cut(s) 599, 745
HinP1I GCGC 2 cut(s) 599, 745
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 4 cut(s) 499, 523, 529, 570
HpaII CCGG 2 cut(s) 303, 719
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 8 cut(s) 231, 252, 315, 322, 352, 528, 673, 681
Hpy188III TCNNGA 2 cut(s) 259, 719
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 4 cut(s) 95, 128, 630, 633
HpyCH4III ACNGT 3 cut(s) 256, 733, 791
HpyCH4IV ACGT 2 cut(s) 7, 579
HpyCH4V TGCA 7 cut(s) 14, 23, 206, 242, 290, 662, 780
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 413, 554
HpyF3I CTNAG 4 cut(s) 60, 319, 408, 741
HpySE526I ACGT 2 cut(s) 7, 579
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 4 cut(s) 14, 240, 345, 659
HspAI GCGC 2 cut(s) 599, 745
Kpn2I TCCGGA 1 cut(s) 718
Kzo9I GATC 3 cut(s) 104, 352, 448
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 4 cut(s) 10, 119, 161, 403
MaeI CTAG 2 cut(s) 756, 814
MaeII ACGT 2 cut(s) 7, 579
MaeIII GTNAC 1 cut(s) 489
MalI GATC 3 cut(s) 106, 354, 450
MboI GATC 3 cut(s) 104, 352, 448
MboII GAAGA 5 cut(s) 110, 270, 382, 694, 758
MflI RGATCY 2 cut(s) 104, 352
MluCI AATT 4 cut(s) 245, 425, 562, 695
MlyI GAGTC 2 cut(s) 493, 538
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 5 cut(s) 321, 328, 403, 604, 667
MroI TCCGGA 1 cut(s) 718
MroXI GAANNNNTTC 2 cut(s) 69, 522
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 303, 719
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 3 cut(s) 20, 413, 554
NdeII GATC 3 cut(s) 104, 352, 448
NlaIII CATG 4 cut(s) 14, 240, 345, 659
NlaIV GGNNCC 1 cut(s) 354
NsbI TGCGCA 1 cut(s) 600
PdmI GAANNNNTTC 2 cut(s) 69, 522
PfeI GAWTC 2 cut(s) 523, 570
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 289, 418
PleI GAGTC 2 cut(s) 493, 537
PpsI GAGTC 2 cut(s) 493, 537
PsiI TTATAA 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 482
PstI CTGCAG 2 cut(s) 208, 292
PsuI RGATCY 2 cut(s) 104, 352
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 2 cut(s) 288, 417
Sau3AI GATC 3 cut(s) 104, 352, 448
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 2 cut(s) 493, 538
ScrFI CCNGG 1 cut(s) 468
SfaNI GCATC 4 cut(s) 10, 119, 161, 403
SfcI CTRYAG 3 cut(s) 204, 288, 402
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 4 cut(s) 245, 425, 562, 695
SsiI CCGC 4 cut(s) 182, 417, 555, 811
SspI AATATT 1 cut(s) 297
SspMI CTAG 2 cut(s) 756, 814
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 256, 733, 791
TaiI ACGT 2 cut(s) 10, 582
TasI AATT 4 cut(s) 245, 425, 562, 695
TatI WGTACW 1 cut(s) 711
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 2 cut(s) 523, 570
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 637
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 62, 351, 762
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 1 cut(s) 637
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 2 cut(s) 245, 425
XmnI GAANNNNTTC 2 cut(s) 69, 522
XspI CTAG 2 cut(s) 756, 814
ZraI GACGTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.