RchiOBHm_Chr1g0317441

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000709
Physical Location & Seq
Reverse (-)
5005806 .. 5007565
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54776

Sequence Viewer

Length: 978 bp
ATGGGCGGAGAGAGGAAGGTTGTGTGTGTTACAGGAGCTTCTGGTTTCATAGCTTCATGGTTGGTGAAGATTTTGTTACAGCGAGGTTATGTCGTCAAAGCCACCGTTCGTGACCCAAATGATCCAAAGAAAACAGAACACTTGCTCTCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGAATTGTTAGAAGAGGGGTCTTTTGACCTTGTAGTTGATGGATGTGAAGGTGTTTTCCATACAGCATCTCCGGTACTATTTTCATCGATCAGTGACCCACAGGCAGAACTGATTGATCCTGCAGTAAAGGGAACGCTTAATGTTCTTAAATCATGCGTGAAATTTCCAACAATCAAGAGGGTAGTTTTAACATCTTCCATGGCTGCAGTTATTATCAATGGAAGACCTTTAACCTCTAATGTAGAAGTTGATGAAACATGGTTTTCTGATCCACTTGTTTGTGAGGAGTTGAAGGCATGGTATTTACTTTCAAAAACTTTAGCAGAGGAGGCTGCTTGGAAATTTGCTAAAGAAAATGGGATTGACATGGTGACCATAAATCCAGCGTATGTGATGGGTCCACTCTTGCAGCCAACTCTTAATTACACTGTGGAGATGGTTCTGAATCTCAAGAATGATGCTCACGAAGTAACAAATGGATATTATTTATCCACTGATGTTAGAGATGTTGCCTCGGCTCATATTCAAGCATTTGAAGTTCCTTCAGCGAGTGGAAGATATTGTCTAGTTGCAAATGTCACCCCTATTTACAAGGCTCTGAAGATTTTAGAACAACTTCATCCGACTTTGTGCCCACCTGAAATATGTGAGCATGATATCCCTTCTGCCCCAGAGTATCAAATATCCCAGGAAAAAGCAAAGAGTTTGGGAGTTAGTTTCCTTCCGTTGGAAGTAAGTCTCAGGGACACTATTGAAAGCCTGAAGGAGAAGGGATTCCTCGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

325

Amino Acids

35.75

Weight (kDa)

5.21

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 5 - 105 1.7e-07 NmrA-like family
Epimerase PF01370 8 - 246 2.6e-19 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 241 4.7e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 10 - 201 2.1e-11 Male sterility protein
GDP_Man_Dehyd PF16363 10 - 129 3e-09 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 12 - 133 7.7e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 968
AciI CCGC 1 cut(s) 6
AclWI GGATC 3 cut(s) 116, 299, 452
AcsI RAATTY 2 cut(s) 350, 530
AcuI CTGAAG 3 cut(s) 717, 809, 971
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 916
AgsI TTSAA 6 cut(s) 184, 481, 501, 716, 725, 944
AjnI CCWGG 1 cut(s) 876
AluBI AGCT 2 cut(s) 38, 53
AluI AGCT 2 cut(s) 38, 53
Alw26I GTCTC 1 cut(s) 932
AlwI GGATC 3 cut(s) 116, 299, 452
Ama87I CYCGRG 1 cut(s) 968
ApeKI GCWGC 3 cut(s) 392, 521, 598
ApoI RAATTY 2 cut(s) 350, 530
Asp700I GAANNNNTTC 3 cut(s) 171, 804, 962
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 3 cut(s) 76, 571, 760
AvaI CYCGRG 1 cut(s) 968
AvaII GGWCC 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 379, 508, 610
BccI CCATC 4 cut(s) 149, 221, 577, 619
BciT130I CCWGG 1 cut(s) 878
BcoDI GTCTC 1 cut(s) 932
BfaI CTAG 1 cut(s) 755
BfmI CTRYAG 2 cut(s) 309, 393
BisI GCNGC 3 cut(s) 393, 522, 599
BlsI GCNGC 3 cut(s) 394, 523, 600
Bme1390I CCNGG 1 cut(s) 878
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 968
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 878
BmsI GCATC 2 cut(s) 263, 637
BpiI GAAGAC 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 623
Bsa29I ATCGAT 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 387, 702, 876
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 916
BseBI CCWGG 1 cut(s) 878
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 387, 702, 876
BseGI GGATG 2 cut(s) 236, 808
BseLI CCNNNNNNNGG 1 cut(s) 916
BseMII CTCAG 1 cut(s) 943
BseRI GAGGAG 2 cut(s) 488, 530
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 3 cut(s) 379, 508, 610
BshVI ATCGAT 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 968
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 1 cut(s) 916
BsmAI GTCTC 1 cut(s) 932
BsmFI GGGAC 1 cut(s) 947
BsoBI CYCGRG 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 824
Bsp143I GATC 4 cut(s) 121, 276, 304, 457
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 942
BspDI ATCGAT 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 588
BspMAI CTGCAG 2 cut(s) 313, 397
BspPI GGATC 3 cut(s) 116, 299, 452
BssECI CCNNGG 3 cut(s) 387, 702, 876
BssMI GATC 4 cut(s) 121, 276, 304, 457
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 2 cut(s) 106, 619
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 929
BstDSI CCRYGG 1 cut(s) 387
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 2 cut(s) 236, 808
BstKTI GATC 4 cut(s) 124, 279, 307, 460
BstMAI GTCTC 1 cut(s) 932
BstMBI GATC 4 cut(s) 121, 276, 304, 457
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNI CCWGG 1 cut(s) 878
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 876
BstSFI CTRYAG 2 cut(s) 309, 393
BstSLI GKGCMC 1 cut(s) 824
BstV1I GCAGC 3 cut(s) 379, 508, 610
BstV2I GAAGAC 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 275
BsuTUI ATCGAT 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 236, 808
BtsIMutI CAGTG 3 cut(s) 286, 615, 681
Cfr13I GGNCC 1 cut(s) 587
ClaI ATCGAT 1 cut(s) 275
Csp6I GTAC 1 cut(s) 263
CviAII CATG 7 cut(s) 57, 342, 388, 447, 486, 556, 842
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 1 cut(s) 929
DpnI GATC 4 cut(s) 123, 278, 306, 459
DpnII GATC 4 cut(s) 121, 276, 304, 457
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 387
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 3 cut(s) 717, 809, 971
Eco88I CYCGRG 1 cut(s) 968
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 876
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 7 cut(s) 60, 345, 391, 450, 489, 559, 845
FaqI GGGAC 1 cut(s) 947
FatI CATG 7 cut(s) 56, 341, 387, 446, 485, 555, 841
Fnu4HI GCNGC 3 cut(s) 393, 522, 599
FokI GGATG 2 cut(s) 243, 795
Fsp4HI GCNGC 3 cut(s) 393, 522, 599
FspBI CTAG 1 cut(s) 755
GluI GCNGC 3 cut(s) 393, 522, 599
HapII CCGG 1 cut(s) 260
Hin1II CATG 7 cut(s) 60, 345, 391, 450, 489, 559, 845
HinfI GANTC 2 cut(s) 634, 963
HpaII CCGG 1 cut(s) 260
HphI GGTGA 3 cut(s) 76, 571, 760
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 457, 633, 789, 813
Hpy188III TCNNGA 4 cut(s) 110, 364, 640, 653
Hpy8I GTNNAC 1 cut(s) 590
HpyAV CCTTC 8 cut(s) 10, 230, 475, 741, 861, 920, 946, 952
HpyCH4III ACNGT 2 cut(s) 106, 619
HpyCH4V TGCA 4 cut(s) 311, 395, 598, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 929
Hsp92II CATG 7 cut(s) 60, 345, 391, 450, 489, 559, 845
Kzo9I GATC 4 cut(s) 121, 276, 304, 457
LmnI GCTCC 2 cut(s) 35, 158
Lsp1109I GCAGC 3 cut(s) 379, 508, 610
LweI GCATC 2 cut(s) 263, 637
MaeI CTAG 1 cut(s) 755
MaeIII GTNAC 7 cut(s) 28, 75, 110, 281, 559, 658, 766
MalI GATC 4 cut(s) 123, 278, 306, 459
MboI GATC 4 cut(s) 121, 276, 304, 457
MboII GAAGA 6 cut(s) 79, 212, 375, 423, 756, 802
MhlI GDGCHC 1 cut(s) 824
MluCI AATT 4 cut(s) 191, 350, 530, 610
MmeI TCCRAC 3 cut(s) 380, 836, 897
MroXI GAANNNNTTC 3 cut(s) 171, 804, 962
MseI TTAA 5 cut(s) 327, 336, 377, 419, 609
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 878
MvaI CCWGG 1 cut(s) 878
MwoI GCNNNNNNNGC 1 cut(s) 518
NcoI CCATGG 1 cut(s) 387
NdeII GATC 4 cut(s) 121, 276, 304, 457
NlaIII CATG 7 cut(s) 60, 345, 391, 450, 489, 559, 845
NlaIV GGNNCC 1 cut(s) 588
NmeAIII GCCGAG 1 cut(s) 683
NmuCI GTSAC 4 cut(s) 110, 281, 559, 766
PaeR7I CTCGAG 1 cut(s) 968
PdmI GAANNNNTTC 3 cut(s) 171, 804, 962
PfeI GAWTC 2 cut(s) 634, 963
PkrI GCNGC 3 cut(s) 394, 523, 600
Psp6I CCWGG 1 cut(s) 876
PspEI GGTNACC 1 cut(s) 559
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 587
PspXI VCTCGAGB 1 cut(s) 968
PstI CTGCAG 2 cut(s) 313, 397
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 5 cut(s) 327, 336, 377, 419, 609
SatI GCNGC 3 cut(s) 393, 522, 599
Sau3AI GATC 4 cut(s) 121, 276, 304, 457
Sau96I GGNCC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 878
SduI GDGCHC 1 cut(s) 824
SetI ASST 9 cut(s) 21, 40, 55, 88, 219, 241, 418, 425, 829
SfaNI GCATC 2 cut(s) 263, 637
SfcI CTRYAG 2 cut(s) 309, 393
Sfr274I CTCGAG 1 cut(s) 968
SinI GGWCC 1 cut(s) 587
SlaI CTCGAG 1 cut(s) 968
SmlI CTYRAG 2 cut(s) 638, 968
SmoI CTYRAG 2 cut(s) 638, 968
Sse9I AATT 4 cut(s) 191, 350, 530, 610
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 876
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 106, 619
TaqI TCGA 2 cut(s) 275, 969
TasI AATT 4 cut(s) 191, 350, 530, 610
TfiI GAWTC 2 cut(s) 634, 963
Tru1I TTAA 5 cut(s) 327, 336, 377, 419, 609
Tru9I TTAA 5 cut(s) 327, 336, 377, 419, 609
TscAI CASTG 3 cut(s) 286, 622, 688
TseFI GTSAC 4 cut(s) 110, 281, 559, 766
TseI GCWGC 3 cut(s) 392, 521, 598
Tsp45I GTSAC 4 cut(s) 110, 281, 559, 766
TspDTI ATGAA 6 cut(s) 37, 45, 164, 261, 456, 797
TspGWI ACGGA 1 cut(s) 903
TspRI CASTG 3 cut(s) 286, 622, 688
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 350, 530
XhoI CTCGAG 1 cut(s) 968
XmnI GAANNNNTTC 3 cut(s) 171, 804, 962
XspI CTAG 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.