Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001403.1

Orthogroup ID

OG0000709

Physical Location & Seq

Genomic Coordinates Reverse (-)

155868 .. 158123

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001403.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgatcatgattcatgacgcaggtgctgattgcaacgcgtttgactttggagcctccggttacatagcatcgtggctagtgaagctcttattacaagaaggttatactgtcaaagccaccgttcgtgacccaaatgatgcaaagaaaacagaacacttgctttcacttgatggagctaaggaaaggcttcatctgttcaaagcagatttattagaagaaggatcttttgaccctgtcgttgatggatgcgaaggtgtttttcatacagcatcccctgtcctattgtcatctactaatccgcaggcagaactaattgaccctgcagtaaagggaacacataatgttctgaaatcatgtgcaaaatttccgactgtcaagagagtggttttaacttcttctatggctgcagtaatattgaccggaaaacctctgacctcagatgtggtagttgatgaaacatggttttcggatccacttttttgtgagaagaataagctatggtatattctttcaaaaactatagctgaggatgctgcttggaaattcgccaaggaaaatgggattgatctggtttcaataaatccagggtttgtgattggtccgttgttacagccgactctcaatctctctgtggaagtgattcagagtctcctaactggcaaggcattgcccgcttcaaattacagattcgttgatgttagagatgttgcctctgcgcatattcaagcctttgaagttccttcagccagtggaaggtattgtttggtcagccatgttgcacacatttccgaggttctgaagattataagacaattttatcccactttgtacattccggaaagatatgagggtgacaataatcctcatcgtattcttccttctgacccaagttatcaagtatccaacgagaaggcaaaaggtttaggaattaacttctttccttttgaagtaacggtcaaagacactgttgaaagcctgaaggagaagggcttcctcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

333

Amino Acids

36.62

Weight (kDa)

5.62

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01511 FvH4_7g01511 FvH4_7g01511 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01520 FvH4_7g01560 FvH4_7g01560
malus_domestica	MD02G1303400.v1.1 MD02G1303800.v1.1 MD02G1303900.v1.1 MD02G1304200.v1.1 MD02G1304400.v1.1 MD02G1304900.v1.1 MD02G1305300.v1.1 MD02G1305400.v1.1 MD04G1006100.v1.1 MD07G1020300.v1.1 MD07G1020900.v1.1 MD07G1021200.v1.1 MD07G1021500.v1.1
prunus_persica	Prupe.2G020700_v2.0.a1 Prupe.2G021000_v2.0.a1 Prupe.2G021100_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021300_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1 Prupe.2G021500_v2.0.a1
pyrus_communis	pycom02g25550 pycom02g25560 pycom02g25570 pycom02g25590 pycom07g01560 pycom07g01570 pycom07g01630
rosa_chinensis	RchiOBHm_Chr1g0317371 RchiOBHm_Chr1g0317421 RchiOBHm_Chr1g0317441 RchiOBHm_Chr1g0317501 RchiOBHm_Chr1g0317581 RchiOBHm_Chr1g0317591
rosa_laevigata	RLG00000030523 RLG00000030595 RLG00000030598
rosa_multiflora	Rmu_sc0001403.1_g000012 Rmu_sc0001403.1_g000037 Rmu_sc0003374.1_g000001 Rmu_sc0003374.1_g000006 Rmu_sc0009583.1_g000010
rosa_roxburghii	Rroxscaffold_4G00330280 Rroxscaffold_4G00330300 Rroxscaffold_4G00330420 Rroxscaffold_4G00330450
rosa_rugosa	Rorug01G0016100 Rorug01G0016200 Rorug01G0016200 Rorug01G0016300 Rorug01G0016400
rosa_samantha	Rh1BG023400 Rh1BG023800 Rh1BG024400 Rh1DG044600 Rh1DG044900 Rh1DG045100 Rh1DG045200 Rh1DG045400 Rh1DG045600
rosa_wichuraiana	Rw0G002050 Rw1G001940 Rw1G001950 Rw1G002000 Rw1G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AarI	CACCTGC	1 cut(s)	11
Acc16I	TGCGCA	1 cut(s)	717
Acc36I	ACCTGC	1 cut(s)	11
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	2 cut(s)	299, 672
AclWI	GGATC	3 cut(s)	229, 464, 477
AcsI	RAATTY	2 cut(s)	362, 542
AcuI	CTGAAG	3 cut(s)	726, 818, 998
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	1 cut(s)	753
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	8 cut(s)	199, 513, 576, 678, 725, 734, 947, 971
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	4 cut(s)	85, 176, 496, 524
AluI	AGCT	4 cut(s)	85, 176, 496, 524
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	3 cut(s)	229, 464, 477
AlwNI	CAGNNNCTG	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	835
ApeKI	GCWGC	2 cut(s)	404, 533
ApoI	RAATTY	2 cut(s)	362, 542
Asp700I	GAANNNNTTC	3 cut(s)	186, 639, 989
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	863
AvaII	GGWCC	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	862, 894
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	391, 520
BccI	CCATC	2 cut(s)	164, 236
BciT130I	CCWGG	1 cut(s)	585
BciVI	GTATCC	1 cut(s)	910
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	3 cut(s)	321, 405, 519
BfuAI	ACCTGC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	910
BisI	GCNGC	2 cut(s)	405, 534
BlsI	GCNGC	2 cut(s)	406, 535
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	52, 471
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	5 cut(s)	77, 127, 236, 278, 520
Bpu10I	CCTNAGC	2 cut(s)	177, 525
BsaJI	CCNNGG	3 cut(s)	549, 584, 789
BsaWI	WCCGGW	3 cut(s)	56, 419, 835
Bsc4I	CCNNNNNNNGG	1 cut(s)	753
Bse1I	ACTGG	2 cut(s)	661, 747
Bse3DI	GCAATG	1 cut(s)	665
BseAI	TCCGGA	1 cut(s)	835
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	549, 584, 789
BseGI	GGATG	3 cut(s)	251, 269, 535
BseLI	CCNNNNNNNGG	1 cut(s)	753
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	2 cut(s)	450, 516
BseNI	ACTGG	2 cut(s)	661, 747
BseXI	GCAGC	2 cut(s)	391, 520
Bsh1236I	CGCG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	57, 420, 836
BslI	CCNNNNNNNGG	1 cut(s)	753
BsmAI	GTCTC	1 cut(s)	653
Bsp13I	TCCGGA	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	4 cut(s)	3, 221, 469, 565
BspACI	CCGC	2 cut(s)	299, 672
BspCNI	CTCAG	2 cut(s)	449, 517
BspEI	TCCGGA	1 cut(s)	835
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	2 cut(s)	6, 13
BspLI	GGNNCC	2 cut(s)	52, 471
BspMAI	CTGCAG	2 cut(s)	325, 409
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	3 cut(s)	229, 464, 477
BsrDI	GCAATG	1 cut(s)	665
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	2 cut(s)	661, 747
BssECI	CCNNGG	3 cut(s)	549, 584, 789
BssMI	GATC	4 cut(s)	3, 221, 469, 565
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	5 cut(s)	109, 121, 373, 955, 967
BstAUI	TGTACA	1 cut(s)	828
BstC8I	GCNNGC	2 cut(s)	303, 672
BstDEI	CTNAG	3 cut(s)	177, 436, 525
BstF5I	GGATG	3 cut(s)	251, 269, 535
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	4 cut(s)	6, 224, 472, 568
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	4 cut(s)	3, 221, 469, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 530, 671
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	1 cut(s)	583
BstSFI	CTRYAG	3 cut(s)	321, 405, 519
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	391, 520
BstX2I	RGATCY	2 cut(s)	221, 469
BstYI	RGATCY	2 cut(s)	221, 469
BsuI	GTATCC	1 cut(s)	910
BtsCI	GGATG	3 cut(s)	251, 269, 535
BtsIMutI	CAGTG	2 cut(s)	754, 963
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	303, 672
CaiI	CAGNNNCTG	1 cut(s)	26
CciI	TCATGA	2 cut(s)	6, 13
CfoI	GCGC	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	829
CviAII	CATG	5 cut(s)	7, 14, 354, 459, 773
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	3 cut(s)	177, 436, 525
DpnI	GATC	4 cut(s)	5, 223, 471, 567
DpnII	GATC	4 cut(s)	3, 221, 469, 565
Eco130I	CCWWGG	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	3 cut(s)	726, 818, 998
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	5 cut(s)	10, 17, 357, 462, 776
FatI	CATG	5 cut(s)	6, 13, 353, 458, 772
FauI	CCCGC	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	405, 534
FokI	GGATG	3 cut(s)	256, 258, 542
Fsp4HI	GCNGC	2 cut(s)	405, 534
FspBI	CTAG	1 cut(s)	77
FspI	TGCGCA	1 cut(s)	717
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	2 cut(s)	405, 534
HapII	CCGG	3 cut(s)	57, 420, 836
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	5 cut(s)	10, 17, 357, 462, 776
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HinfI	GANTC	5 cut(s)	10, 616, 640, 646, 687
HpaII	CCGG	3 cut(s)	57, 420, 836
HphI	GGTGA	1 cut(s)	863
Hpy188I	TCNGA	9 cut(s)	348, 369, 432, 439, 469, 645, 790, 798, 883
Hpy188III	TCNNGA	5 cut(s)	7, 14, 125, 376, 836
HpyAV	CCTTC	9 cut(s)	92, 212, 245, 747, 750, 888, 904, 973, 979
HpyCH4III	ACNGT	5 cut(s)	109, 121, 373, 955, 967
HpyCH4V	TGCA	6 cut(s)	33, 140, 323, 359, 407, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 530, 671
HpyF3I	CTNAG	3 cut(s)	177, 436, 525
Hsp92II	CATG	5 cut(s)	10, 17, 357, 462, 776
HspAI	GCGC	1 cut(s)	716
Kpn2I	TCCGGA	1 cut(s)	835
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 221, 469, 565
LmnI	GCTCC	2 cut(s)	50, 173
Lsp1109I	GCAGC	2 cut(s)	391, 520
LweI	GCATC	5 cut(s)	77, 127, 236, 278, 520
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	5 cut(s)	59, 125, 606, 851, 949
MalI	GATC	4 cut(s)	5, 223, 471, 567
MboI	GATC	4 cut(s)	3, 221, 469, 565
MboII	GAAGA	5 cut(s)	227, 387, 499, 811, 866
MflI	RGATCY	2 cut(s)	221, 469
MluCI	AATT	7 cut(s)	312, 362, 542, 679, 812, 927, 997
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	610, 655
MmeI	TCCRAC	2 cut(s)	392, 927
MnlI	CCTC	8 cut(s)	64, 438, 445, 520, 721, 784, 841, 873
MroI	TCCGGA	1 cut(s)	835
MroXI	GAANNNNTTC	3 cut(s)	186, 639, 989
MseI	TTAA	2 cut(s)	389, 930
MspI	CCGG	3 cut(s)	57, 420, 836
MspR9I	CCNGG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	82, 530, 671
NdeII	GATC	4 cut(s)	3, 221, 469, 565
NlaIII	CATG	5 cut(s)	10, 17, 357, 462, 776
NlaIV	GGNNCC	2 cut(s)	52, 471
NmuCI	GTSAC	2 cut(s)	125, 851
NsbI	TGCGCA	1 cut(s)	717
PagI	TCATGA	2 cut(s)	6, 13
PaqCI	CACCTGC	1 cut(s)	11
PdmI	GAANNNNTTC	3 cut(s)	186, 639, 989
PfeI	GAWTC	3 cut(s)	10, 640, 687
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	406, 535
PleI	GAGTC	2 cut(s)	610, 654
PpsI	GAGTC	2 cut(s)	610, 654
PsiI	TTATAA	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	52, 471
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	2 cut(s)	325, 409
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	221, 469
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
SaqAI	TTAA	2 cut(s)	389, 930
SatI	GCNGC	2 cut(s)	405, 534
Sau3AI	GATC	4 cut(s)	3, 221, 469, 565
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	2 cut(s)	610, 655
ScrFI	CCNGG	1 cut(s)	585
SfaNI	GCATC	5 cut(s)	77, 127, 236, 278, 520
SfcI	CTRYAG	3 cut(s)	321, 405, 519
SinI	GGWCC	1 cut(s)	599
Sse9I	AATT	7 cut(s)	312, 362, 542, 679, 812, 927, 997
SsiI	CCGC	2 cut(s)	299, 672
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	5 cut(s)	109, 121, 373, 955, 967
TasI	AATT	7 cut(s)	312, 362, 542, 679, 812, 927, 997
TatI	WGTACW	1 cut(s)	828
TfiI	GAWTC	3 cut(s)	10, 640, 687
Tru1I	TTAA	2 cut(s)	389, 930
Tru9I	TTAA	2 cut(s)	389, 930
TscAI	CASTG	2 cut(s)	754, 970
TseFI	GTSAC	2 cut(s)	125, 851
TseI	GCWGC	2 cut(s)	404, 533
Tsp45I	GTSAC	2 cut(s)	125, 851
TspDTI	ATGAA	3 cut(s)	179, 251, 468
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	754, 970
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	362, 542
XmnI	GAANNNNTTC	3 cut(s)	186, 639, 989
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.