3-beta hydroxysteroid dehydrogenase/isomerase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g01511 FvH4_7g01562 |
| malus_domestica | MD02G1303100.v1.1 MD02G1303600.v1.1 MD02G1305000.v1.1 MD07G1021100.v1.1 |
| pyrus_communis | pycom03g13000 |
| rosa_chinensis | RchiOBHm_Chr1g0317491 RchiOBHm_Chr1g0317571 RchiOBHm_Chr1g0317671 RchiOBHm_Chr1g0339871 RchiOBHm_Chr1g0350261 RchiOBHm_Chr6g0278881 |
| rosa_laevigata | RLG00000008039 RLG00000018453 |
| rosa_multiflora | Rmu_sc0001037.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00227970 Rroxscaffold_7G00208320 |
| rosa_rugosa | Rorug04G0048200 |
| rosa_samantha | Rh1AG027600 Rh1AG027700 Rh1AG028100 Rh1AG028200 Rh1AG028500 Rh1AG028600 Rh1AG028800 Rh1AG029000 Rh1BG023500 Rh1BG065400 Rh2AG270400 Rh2BG281800 Rh2DG278200 Rh6BG365600 Rh6CG236400 Rh6DG227600 |
| rosa_wichuraiana | Rw0G018780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 171 |
| AclWI | GGATC | 2 cut(s) | 52, 181 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 98 |
| AgsI | TTSAA | 1 cut(s) | 167 |
| AjnI | CCWGG | 1 cut(s) | 97 |
| AluBI | AGCT | 3 cut(s) | 64, 121, 155 |
| AluI | AGCT | 3 cut(s) | 64, 121, 155 |
| AlwI | GGATC | 2 cut(s) | 52, 181 |
| ApeKI | GCWGC | 1 cut(s) | 155 |
| BbvI | GCAGC | 1 cut(s) | 142 |
| BciT130I | CCWGG | 1 cut(s) | 99 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BglII | AGATCT | 1 cut(s) | 160 |
| BisI | GCNGC | 1 cut(s) | 156 |
| BlsI | GCNGC | 1 cut(s) | 157 |
| Bme1390I | CCNGG | 1 cut(s) | 99 |
| BmrFI | CCNGG | 1 cut(s) | 99 |
| BmsI | GCATC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 1 cut(s) | 97 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 98 |
| Bse1I | ACTGG | 2 cut(s) | 28, 37 |
| BseBI | CCWGG | 1 cut(s) | 99 |
| BseDI | CCNNGG | 1 cut(s) | 97 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 98 |
| BseNI | ACTGG | 2 cut(s) | 28, 37 |
| BseXI | GCAGC | 1 cut(s) | 142 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 98 |
| BsmI | GAATGC | 1 cut(s) | 108 |
| Bsp143I | GATC | 3 cut(s) | 44, 160, 173 |
| BspACI | CCGC | 1 cut(s) | 171 |
| BspMAI | CTGCAG | 1 cut(s) | 160 |
| BspPI | GGATC | 2 cut(s) | 52, 181 |
| BsrI | ACTGG | 2 cut(s) | 28, 37 |
| BssECI | CCNNGG | 1 cut(s) | 97 |
| BssMI | GATC | 3 cut(s) | 44, 160, 173 |
| Bst2UI | CCWGG | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 1 cut(s) | 85 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 96 |
| BstKTI | GATC | 3 cut(s) | 47, 163, 176 |
| BstMBI | GATC | 3 cut(s) | 44, 160, 173 |
| BstNI | CCWGG | 1 cut(s) | 99 |
| BstSCI | CCNGG | 1 cut(s) | 97 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstV1I | GCAGC | 1 cut(s) | 142 |
| BstX2I | RGATCY | 2 cut(s) | 160, 173 |
| BstYI | RGATCY | 2 cut(s) | 160, 173 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| CviAII | CATG | 2 cut(s) | 48, 74 |
| CviJI | RGCY | 7 cut(s) | 52, 64, 121, 133, 155, 185, 193 |
| CviKI_1 | RGCY | 7 cut(s) | 52, 64, 121, 133, 155, 185, 193 |
| DpnI | GATC | 3 cut(s) | 46, 162, 175 |
| DpnII | GATC | 3 cut(s) | 44, 160, 173 |
| Eco32I | GATATC | 1 cut(s) | 116 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 96 |
| EcoRII | CCWGG | 1 cut(s) | 97 |
| EcoRV | GATATC | 1 cut(s) | 116 |
| FaeI | CATG | 2 cut(s) | 51, 77 |
| FaiI | YATR | 3 cut(s) | 49, 59, 75 |
| FatI | CATG | 2 cut(s) | 47, 73 |
| Fnu4HI | GCNGC | 1 cut(s) | 156 |
| Fsp4HI | GCNGC | 1 cut(s) | 156 |
| GluI | GCNGC | 1 cut(s) | 156 |
| Hin1II | CATG | 2 cut(s) | 51, 77 |
| HindIII | AAGCTT | 1 cut(s) | 62 |
| HinfI | GANTC | 1 cut(s) | 36 |
| Hpy188I | TCNGA | 2 cut(s) | 44, 149 |
| Hpy188III | TCNNGA | 1 cut(s) | 177 |
| HpyCH4III | ACNGT | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 4 cut(s) | 20, 70, 106, 158 |
| Hsp92II | CATG | 2 cut(s) | 51, 77 |
| Kzo9I | GATC | 3 cut(s) | 44, 160, 173 |
| LpnPI | CCDG | 7 cut(s) | 9, 18, 38, 84, 105, 111, 195 |
| Lsp1109I | GCAGC | 1 cut(s) | 142 |
| LweI | GCATC | 1 cut(s) | 153 |
| MaeIII | GTNAC | 1 cut(s) | 77 |
| MalI | GATC | 3 cut(s) | 46, 162, 175 |
| MboI | GATC | 3 cut(s) | 44, 160, 173 |
| MboII | GAAGA | 1 cut(s) | 155 |
| MflI | RGATCY | 2 cut(s) | 160, 173 |
| MnlI | CCTC | 1 cut(s) | 135 |
| MspR9I | CCNGG | 1 cut(s) | 99 |
| Mva1269I | GAATGC | 1 cut(s) | 108 |
| MvaI | CCWGG | 1 cut(s) | 99 |
| NdeII | GATC | 3 cut(s) | 44, 160, 173 |
| NlaIII | CATG | 2 cut(s) | 51, 77 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 184 |
| PctI | GAATGC | 1 cut(s) | 108 |
| PfeI | GAWTC | 1 cut(s) | 36 |
| PkrI | GCNGC | 1 cut(s) | 157 |
| Psp6I | CCWGG | 1 cut(s) | 97 |
| PspGI | CCWGG | 1 cut(s) | 97 |
| PstI | CTGCAG | 1 cut(s) | 160 |
| PsuI | RGATCY | 2 cut(s) | 160, 173 |
| SatI | GCNGC | 1 cut(s) | 156 |
| Sau3AI | GATC | 3 cut(s) | 44, 160, 173 |
| ScrFI | CCNGG | 1 cut(s) | 99 |
| SetI | ASST | 5 cut(s) | 66, 94, 123, 127, 157 |
| SfaNI | GCATC | 1 cut(s) | 153 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| SsiI | CCGC | 1 cut(s) | 171 |
| StyD4I | CCNGG | 1 cut(s) | 97 |
| TaaI | ACNGT | 1 cut(s) | 85 |
| TaqI | TCGA | 2 cut(s) | 88, 178 |
| TfiI | GAWTC | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseI | GCWGC | 1 cut(s) | 155 |
| TspDTI | ATGAA | 2 cut(s) | 28, 74 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 96 |