RchiOBHm_Chr1g0329171

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
18666721 .. 18667005
285 bp
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UTR
Exon/CDS
Intron
PRQ55851

Sequence Viewer

Length: 174 bp
ATGCAGGGTACCTCTCTGACCCTCACAAAGGTCGCTCCCAAACTGGTTATGTCTTTACCATGGGAAGCACTGCGATATCTTGGAGGTCTACAAAACAGACCCTTGTTGCTACTTCCTCAAATCATGCAGAGATTATTGCTCTACATGAAGCTGTACGTGAATGTGTATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.55

Weight (kDa)

10.12

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 88
AfaI GTAC 2 cut(s) 10, 155
AfiI CCNNNNNNNGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Asp718I GGTACC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 10
BsaAI YACGTR 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 59
BstENI CCTNNNNNAGG 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
Csp6I GTAC 2 cut(s) 9, 154
CviAII CATG 3 cut(s) 60, 124, 145
CviJI RGCY 2 cut(s) 151, 171
CviKI_1 RGCY 2 cut(s) 151, 171
CviQI GTAC 2 cut(s) 9, 154
Eco130I CCWWGG 1 cut(s) 59
Eco32I GATATC 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 3 cut(s) 63, 127, 148
FaiI YATR 5 cut(s) 50, 61, 125, 146, 168
FatI CATG 3 cut(s) 59, 123, 144
FblI GTMKAC 1 cut(s) 88
Hin1II CATG 3 cut(s) 63, 127, 148
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 4, 127
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 63, 127, 148
KpnI GGTACC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 1 cut(s) 29
MaeII ACGT 1 cut(s) 156
MnlI CCTC 4 cut(s) 22, 32, 77, 126
NcoI CCATGG 1 cut(s) 59
NlaIII CATG 3 cut(s) 63, 127, 148
NlaIV GGNNCC 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 10
RsaI GTAC 2 cut(s) 10, 155
RsaNI GTAC 2 cut(s) 9, 154
SetI ASST 5 cut(s) 14, 33, 88, 153, 159
SgeI CNNG 8 cut(s) 17, 56, 72, 92, 115, 136, 157, 169
StyI CCWWGG 1 cut(s) 59
TaiI ACGT 1 cut(s) 159
TscAI CASTG 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 1 cut(s) 75
XagI CCTNNNNNAGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.