RchiOBHm_Chr5g0077491

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
83398843 .. 83400180
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35206

Sequence Viewer

Length: 264 bp
ATGAAACAAAGCCACGAAATTGTTGATGAGGGGAACAGCAACAAGATGAGTAGAGGGAAGACAAGAAGAAGAAGCACTTGTTCGAATCATCTTCAGCATCTCTGTGTTTTACCTGAAAAGAGGAAAGCAGGCCATAGTTGGTCGTTTTATTTTTTAGATTTAATGGTAGACCTGATAAAACACCGTGTCGTGCTGTGTTCGTGTCGTTTTAAATTCGTTTTATATATTTATCGTGGCATGCTAAAATCAAAACCAAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.32

Weight (kDa)

10.04

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 77
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 65
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 83
BshFI GGCC 1 cut(s) 132
BsnI GGCC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 83
BspANI GGCC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 130, 239
BstNSI RCATGY 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 130, 239
CviAII CATG 1 cut(s) 238
CviJI RGCY 2 cut(s) 12, 132
CviKI_1 RGCY 2 cut(s) 12, 132
DraI TTTAAA 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 77
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 135, 223, 225, 239
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FatI CATG 1 cut(s) 237
FblI GTMKAC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 132
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 185
Hsp92II CATG 1 cut(s) 241
LpnPI CCDG 3 cut(s) 114, 126, 185
LweI GCATC 1 cut(s) 106
MboII GAAGA 4 cut(s) 70, 78, 81, 83
MluCI AATT 2 cut(s) 18, 212
MnlI CCTC 3 cut(s) 22, 47, 114
MseI TTAA 3 cut(s) 161, 210, 262
MslI CAYNNNNRTG 1 cut(s) 102
NlaIII CATG 1 cut(s) 241
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 1 cut(s) 83
PaeI GCATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 3 cut(s) 161, 210, 262
SetI ASST 2 cut(s) 115, 174
SfaNI GCATC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 102
SphI GCATGC 1 cut(s) 241
Sse9I AATT 2 cut(s) 18, 212
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 18, 212
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 3 cut(s) 161, 210, 262
Tru9I TTAA 3 cut(s) 161, 210, 262
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.